View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_low_6 (Length: 502)
Name: NF6014_low_6
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 4590357 - 4589865
Alignment:
| Q |
1 |
tccacaagcagaagaaatgttgctacaaatttgaggaagacaatatccttagcacaacacttgtacataaagggacttttttgacacaaatatgtcactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4590357 |
tccacaagcagaagaaatgttgctacaaatttgaggaagacaatatccttagcacaacacttgtacataaaggggcttttttgacacaaatatgtcactg |
4590258 |
T |
|
| Q |
101 |
ctagatgataactgacaaggcaacatctctgttatttcactaagattttcctcgttactgttatattatcagaaatctgggctgaaaatctttaaaccaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4590257 |
ctagatgataactgacaaggcaacatctttgttatttcactaagattttcctcgttactgctatattatcagaaatctgggctgaaaatctttaaaccaa |
4590158 |
T |
|
| Q |
201 |
cacgaaaaattgttgcttaggtaaaaattagacgactctcgaattctcactggtctgtcaacaaactaaaaacaagtaaagcattcaggacaggaattta |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4590157 |
cacgaaaagttgttgcttaggtaaaaattagacgactctcgaattctccctggtctgtcaacaaactaaaaacaagtaaagcattcaggacaggaattta |
4590058 |
T |
|
| Q |
301 |
tttctgctatgattggtaaattactaaaataggttgcaacaataacaaaacctacgtcaaattctcaaccgccaaacatagtatcattccctcctatgta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4590057 |
tttctgctatgattggtaaattactaaaataggttgcaacaataacaaaacctacgtcaaattctcaaccgccaaccatagtatcattccctcctatgta |
4589958 |
T |
|
| Q |
401 |
tgttcctgcctaagtcctgttataagtacccattcgtattccatgttatatccaatttgcatccttcccttttatttgtttcagtttctctgc |
493 |
Q |
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| T |
4589957 |
tgttcctgcctaagtcctgttataagtacccattcgtattccatgttatatccaatttgcatccttcccttttatttgtttcagtttctctgc |
4589865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 4604238 - 4603991
Alignment:
| Q |
1 |
tccacaagcagaagaaatgttgctacaaatttgaggaaga---caatatccttagcacaacacttgtacataaagggacttttttgacacaaatatgtca |
97 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
4604238 |
tccactagcagaagaaatgttgctacaaagttgaggaagaaaacaatatttttagcccaacacttgtacataaaggggcttttttgacacaaatatatca |
4604139 |
T |
|
| Q |
98 |
ctgctagatgataactgacaaggcaacatctctgttatttcactaagattttcctcgttactgttatattatcagaaatctgggctgaaaatctttaaac |
197 |
Q |
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||| ||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
4604138 |
ctgttagatgataactgacgaggcaacatctttgttatttcactaagaatttcctcgttactg--ctattatcagaaatttgggctgaaaatctttaaac |
4604041 |
T |
|
| Q |
198 |
caacacgaaaaattgttgcttaggtaaaaattagacgactctcgaattct |
247 |
Q |
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| ||| |||| |||||| ||||| ||||| ||||||| ||||||||||| |
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| T |
4604040 |
cttcacaaaaagttgttgtttagggaaaaactagacgattctcgaattct |
4603991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 232 - 366
Target Start/End: Complemental strand, 4603770 - 4603637
Alignment:
| Q |
232 |
acgactctcgaattctcactggtctgtcaacaaactaaaaacaagtaaagcattcaggacaggaatttatttctgctatgattggtaaattactaaaata |
331 |
Q |
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|||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||||||| |
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| T |
4603770 |
acgattctcgaattctcactgacctgtcgacaaattaaaaacaagtaaagcattcaggatagtaatttaattctgctatgattggtaaaatactaaaata |
4603671 |
T |
|
| Q |
332 |
ggttgcaacaataacaaaacctacgtcaaattctc |
366 |
Q |
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|||| || ||||||| | |||| ||||||||||| |
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| T |
4603670 |
-gttggaaaaataacagagcctatgtcaaattctc |
4603637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 595643 - 595552
Alignment:
| Q |
229 |
tagacgactctcgaattctcactggtctgtcaacaaactaaaaacaagtaaagcattcaggacaggaatttatttctgctatgattggtaaa |
320 |
Q |
| |
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||||||||||| |||||||||||| |||||||||||||||||| |||| |||||| ||| ||||| ||| |||| |||||||||||||||| |
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| T |
595643 |
tagacgactcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcaatcaagacagtaatccatttttgctatgattggtaaa |
595552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 595483 - 595442
Alignment:
| Q |
454 |
aatttgcatccttcccttttatttgtttcagtttctctgctc |
495 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||||||| |
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| T |
595483 |
aatttgcatccttcttttttatttgtttctgtttctctgctc |
595442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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