View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_low_7 (Length: 500)
Name: NF6014_low_7
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 44531187 - 44530714
Alignment:
| Q |
1 |
tcgataaatcgggttcaactggattagatgtttgttttagtttgccatcagggaaaacagaagttgaaattccaaaattagtttttcatttcaaaggtgg |
100 |
Q |
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| T |
44531187 |
tcgataaatcgggttcaactggattagatgtttgttttagtttgccatcagggaaaacagaagttgaaattccaaaattagtttttcatttcaaaggtgg |
44531088 |
T |
|
| Q |
101 |
tgatttggaattgcctggtgaaaattatatgattgctgattcaagtttaggtgttgcttgtttagctatgggagcttctaatggaatgtctatctttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44531087 |
tgatttggaattgcctggtgaaaattatatgattgctgattcaagtttaggtgttgcttgtttagctatgggagcttctaatggaatgtctatctttggt |
44530988 |
T |
|
| Q |
201 |
aatattcaacaacaaaatattttggttaatcatgatcttcagaaggaaactattacttttattcctactcaatgtaataagttgtgattgagtatttgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44530987 |
aatattcaacaacaaaatattttggttaatcatgatcttcagaaggaaactattacttttattcctactcaatgtaataagttgtgattgagtatttgtg |
44530888 |
T |
|
| Q |
301 |
tcatatatatgaacatgatggactcatcaaaatatctttgtttctttgtttctaagttacctttgtactaatattgttgttatgaatgaatctcttagtt |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44530887 |
tc----atatgaacatgatggactcatcaaaatatctttgtttctttgtttctaagttacctttgtactaatattgttgtt----atgaatctcttagtt |
44530796 |
T |
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| Q |
401 |
cgttaataatatgaaagttttctttccacaaatccaagtaatcttgattgatcatgttgcattgtatacagtagttgaaatt |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44530795 |
cgttaataatatgaaagttttctttccacaaatccaagtaatcttgattgatcatgttgcattgtatacagtagttgaaatt |
44530714 |
T |
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