View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6015_high_11 (Length: 355)

Name: NF6015_high_11
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6015_high_11
NF6015_high_11
[»] chr1 (3 HSPs)
chr1 (3-340)||(49169189-49169527)
chr1 (110-175)||(2790960-2791025)
chr1 (110-175)||(14471942-14472007)
[»] chr5 (3 HSPs)
chr5 (267-328)||(15808612-15808675)
chr5 (110-175)||(12842576-12842641)
chr5 (267-315)||(15832009-15832057)
[»] chr8 (1 HSPs)
chr8 (110-175)||(91429-91494)
[»] chr7 (1 HSPs)
chr7 (110-175)||(11716232-11716297)
[»] chr6 (2 HSPs)
chr6 (110-175)||(16772851-16772916)
chr6 (110-175)||(32707854-32707919)
[»] chr4 (1 HSPs)
chr4 (110-175)||(14026656-14026721)
[»] chr3 (2 HSPs)
chr3 (110-175)||(5378413-5378478)
chr3 (110-166)||(13719540-13719596)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 3 - 340
Target Start/End: Original strand, 49169189 - 49169527
Alignment:
Q  3 atagtagcttagagtcaataataggatggtgcaagggatcttgactccctcgaaataataacaaatccatcatcccaatatggcgaaatattggcaacat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  49169189 atagtagcttagagtcaataataggatggtgcaagggatcttgactccctcgaaataataacaaatcaatcatcccaatatggcgaaagattggcaacat 49169288  T
Q  103 tgttacatgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactatattattgaagggactatcaactctttg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  49169289 tgttacatgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactatattattgaagggaccatcaactctttg 49169388  T
Q  203 agataacgtttgaaaacatattaattcacaaactatctgccgaaactcaaagacatcaaaatatagtttcttattgatgacaagcatattaattcattag 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49169389 agataacgtttgaaaacatattaattcacaaactatctgccgaaactcaaagacatcaaaatatagtttcttattgatgacaagcatattaattcattag 49169488  T
Q  303 tactagtattgata-tttttgttagcatcatcagtttga 340  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  49169489 tactagtattgatattttttgttagcatcatcagtttga 49169527  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 2790960 - 2791025
Alignment:
Q  110 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 175  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| ||||||||||| || |||||    
T  2790960 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcattgattttttgaactat 2791025  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 14471942 - 14472007
Alignment:
Q  110 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 175  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| ||||||||||| || |||||    
T  14471942 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcattgattttctgtactat 14472007  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 15808675 - 15808612
Alignment:
Q  267 agtttcttattgatgacaagcatattaattcattagtactagtattgat--atttttgttagca 328  Q
    |||||| |||||||||||||||||| |||||| ||| || |||||||||  |||||||||||||    
T  15808675 agtttcctattgatgacaagcatatcaattcaatagaacaagtattgatcaatttttgttagca 15808612  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 12842641 - 12842576
Alignment:
Q  110 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 175  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| || |||||||| || |||||    
T  12842641 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactat 12842576  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 15832057 - 15832009
Alignment:
Q  267 agtttcttattgatgacaagcatattaattcattagtactagtattgat 315  Q
    |||||| |||||||||||||||||| |||||| ||| || |||||||||    
T  15832057 agtttcctattgatgacaagcatatcaattcaatagaacaagtattgat 15832009  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 91494 - 91429
Alignment:
Q  110 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 175  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| || |||||||| || |||||    
T  91494 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactat 91429  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 11716297 - 11716232
Alignment:
Q  110 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 175  Q
    |||||||||||||||| || || ||| ||| |||||||||| ||| ||||||||||| || |||||    
T  11716297 tgctgagacaccataggttcctagcaattctaccttgtaagcattgtcattgattttttgaactat 11716232  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 16772851 - 16772916
Alignment:
Q  110 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 175  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| || |||||||| || |||||    
T  16772851 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactat 16772916  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 32707919 - 32707854
Alignment:
Q  110 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 175  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| || |||||||| || |||||    
T  32707919 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactat 32707854  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 14026721 - 14026656
Alignment:
Q  110 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 175  Q
    |||||||||||||||| || |||| | ||| |||||||||| ||| ||||||||||| || |||||    
T  14026721 tgctgagacaccataggttcctggaaattctaccttgtaagcattgtcattgattttttgaactat 14026656  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 5378413 - 5378478
Alignment:
Q  110 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 175  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| || |||||||| || |||||    
T  5378413 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactat 5378478  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 13719540 - 13719596
Alignment:
Q  110 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgatttt 166  Q
    |||||||||||||||| || |||| | ||| |||||||||| ||| |||||||||||    
T  13719540 tgctgagacaccataggttcctggaaattctaccttgtaagcattgtcattgatttt 13719596  T

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