View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6015_high_5 (Length: 537)
Name: NF6015_high_5
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6015_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 29770824 - 29771342
Alignment:
| Q |
1 |
ttagcaacatgttcaacttcaacaaggttatgatatgctgatctagctttgtgaccatagttttatcaaaactaacttgcgagcaagttcattaaactta |
100 |
Q |
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| T |
29770824 |
ttagcaacatgttcaacttcaacaaggttatgatatgctgatctagctttgtgaccctagttttatcaaa-ctaacttgcgagcaagttcattaaactta |
29770922 |
T |
|
| Q |
101 |
tgagctagcttgtcccgnnnnnnnnnnnnn-----aatttaaaatagtttaatcaaacggataggctttgtttgtgataaatagtttaatttaaaaacga |
195 |
Q |
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| T |
29770923 |
tgagctaacctgtccttttttttttttttttttttaatttaaaatagtttaatcaaac--atatgctttgtttgtgataagtagtttactttaaaaacga |
29771020 |
T |
|
| Q |
196 |
cattatagtacttaattaattattatattttgaagaaagtactttattaattaatgtcttgtaatatatctcaagacacataagttttctagattatata |
295 |
Q |
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| T |
29771021 |
cattatagtacttaattaattattatattttgaagaaagtactttattaattaatgtcttgtaatatatctcaagacacataagttttctagattatata |
29771120 |
T |
|
| Q |
296 |
tcgaggtgatgtaatacaattgatagaaaacctaattcataactactccattataataaccccattttctcctctgtgatttttctctgcgtgtgatata |
395 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29771121 |
tcaaggtgatgtaatacaattgatagaaaacctaattcataactactccatt---ataaccccattttctcctctgtgatttttctctgcgtgtgatata |
29771217 |
T |
|
| Q |
396 |
gatgatttgattatgtagaatgtttgtatgggagcatttggtttctcttaataactattgatcgggtgctattagatagggttttcagtttttgtccnnn |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
29771218 |
gatgatttgattatgtagaatgtttgtatgggagcatttggcttctcttaataactattgatcggatgctattagatagggttttccgtttttgtccaaa |
29771317 |
T |
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| Q |
496 |
nnnnggtagggtttttagttacttc |
520 |
Q |
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| T |
29771318 |
aaaaggtagggtttttagttacttc |
29771342 |
T |
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