View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6015_low_1 (Length: 735)
Name: NF6015_low_1
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6015_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 21 - 408
Target Start/End: Complemental strand, 53175546 - 53175165
Alignment:
| Q |
21 |
atatacacagctcttcttcaagctacaccttgaaaccaaacacagtcttggctttgtctctatgtttgtagactcaaacacaaacacagacacggacaca |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
53175546 |
atatacacagctcttcttcaagctacaccttgaaaccaaacacagtcttggctttgtctctatgtttgtagactcaaacacaaacacagacac------a |
53175453 |
T |
|
| Q |
121 |
gagttatctatttcattgtcctctgttttgcatgaaacagagtactctgtttgatattcattgtgatgaggtatataagaacaggcagcttcaagaggct |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53175452 |
gagttatctatttcattgtcctctgttttgcatgaaacagagtactctgtttgatattcattgtgatgaggtatataagaacaggcagcttcaagaggct |
53175353 |
T |
|
| Q |
221 |
cttctcatttaccaaacgtggtttaggggaaccagttctgagtcccaaaggtgaagaaaatgaaaagagcttgaagattcttccatatgaagaagaaact |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53175352 |
cttctcatttaccaaacgtggtttaggggaaccagttctgagtcccaaaggtgaagaaaatgaaaagagcttgaagattcttccatatgaagaagaaact |
53175253 |
T |
|
| Q |
321 |
tgtcaaagaccaacttggaaatgtttctcttatgaagagttgtttgatgctaccaatggcttcaactcaggtgattaagacttgtttg |
408 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53175252 |
tgtcaaaaaccaacatggaaatgtttctcttatgaagagttgtttgatgctaccaatggcttcaactcaggtgattaagacttgtttg |
53175165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 486 - 724
Target Start/End: Complemental strand, 53175081 - 53174843
Alignment:
| Q |
486 |
agaaaatatggttggaaaaggtggttatgctgaggtttacaagggaacattgaaaaatggtgaagaaattgctgtgaagagattaacaagagcttcaaag |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53175081 |
agaaaatatggttggaaaaggtggttatgctgaggtttacaagggaacattgaaaaatggtgaagaaattgctgtgaagagattaacaagagcttcaaag |
53174982 |
T |
|
| Q |
586 |
gatgaaagaaaagagaaagagtttttgacagagattggaacaattggtcatgttcgtcattccaatgttttatctcttctaggatgttgtattgacaatg |
685 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53174981 |
gatgaaagaaaagagaaagagtttttgacagagattggaacaattggtcatgttcgtcattccaatgttttatctcttctaggatgttgtattgacaatg |
53174882 |
T |
|
| Q |
686 |
gactttactttgtttttgaactatccaccacaggttctg |
724 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53174881 |
gactttactttgtttttgaactatccaccactggttctg |
53174843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University