View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6015_low_12 (Length: 346)
Name: NF6015_low_12
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6015_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 6134221 - 6134543
Alignment:
| Q |
17 |
atcttcctggtgatgatttggccaaagtgtgttgtacttgttcaaaattgcaataccttgcttctaatgatgagttatggaagaagaagtttgaggagga |
116 |
Q |
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| T |
6134221 |
atcttcctggtgatgatttggccaaagtgtgttgtacttgttcaaaattgcaataccttgcttctaatgatgagttatggaagaagaagtttgaggagga |
6134320 |
T |
|
| Q |
117 |
gtttggacaaagtgtgaatggtatgaggttttataaaagcttgtatgctcgttaccgcgcaacaaagaagaattcagatcaatcgttttcttttcgaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6134321 |
gtttggacaaagtgtgaatggtatgaggttttataagagcttgtatgctcgttaccgcgcaacaaagaagaattcagatcaatcgttttcttttcgaatt |
6134420 |
T |
|
| Q |
217 |
cctcggactcgtattttgagatactttcaaaggagaagaggtggtggttagtgtcatcttggaggatttgaatgaataattcgatgattccaagtgttgg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6134421 |
cctcggactcgtattttgagatactttcaaaggagaagaggtggtggttagtgtcatcttggaggatttgaatgaataatccgatgattccaagtgttgg |
6134520 |
T |
|
| Q |
317 |
gaaagaatccttgttaacctttg |
339 |
Q |
| |
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||| ||||||||||||||||||| |
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| T |
6134521 |
gaatgaatccttgttaacctttg |
6134543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 20600404 - 20600726
Alignment:
| Q |
17 |
atcttcctggtgatgatttggccaaagtgtgttgtacttgttcaaaattgcaataccttgcttctaatgatgagttatggaagaagaagtttgaggagga |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||||| |
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| T |
20600404 |
atcttcctggtgatgatttggccaaagtctgttgtacttgttcaaagttgcaataccttgcctcaaatgatgagttatggaagaaaaagtttgaggagga |
20600503 |
T |
|
| Q |
117 |
gtttggacaaagtgtgaatggtatgaggttttataaaagcttgtatgctcgttaccgcgcaacaaagaagaattcagatcaatcgttttcttttcgaatt |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||| |
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| T |
20600504 |
gtttggacaaagtgtgaatggtatgaggttttataagagcttgtatgctcaataccgggaaacaaagaagaattcagagcaatcgttttcttttcgaatt |
20600603 |
T |
|
| Q |
217 |
cctcggactcgtattttgagatactttcaaaggagaagaggtggtggttagtgtcatcttggaggatttgaatgaataattcgatgattccaagtgttgg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || |||||||||||||| | |
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| T |
20600604 |
cctcggactcgtattttgagatactttcaaaggagaagaggtggtggttagtgtcatcttggaggatttaaaagaataatccggtgattccaagtgttag |
20600703 |
T |
|
| Q |
317 |
gaaagaatccttgttaacctttg |
339 |
Q |
| |
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||| ||||||||||||||||||| |
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|
| T |
20600704 |
gaatgaatccttgttaacctttg |
20600726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 47944483 - 47944312
Alignment:
| Q |
17 |
atcttcctggtgatgatttggccaaagtgtgttgtacttgttcaaaattgcaataccttgcttctaatgatgagttatggaagaagaagtttgaggagga |
116 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| || ||||| ||||||| |||||||| || |||||||| || |||||||||||||| |||||||| |
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| T |
47944483 |
atcttcccggtgatgatttggccaaagtttgttgcacgtgttctgaattgcagtaccttgcctcgaatgatgacttgtggaagaagaagttcgaggagga |
47944384 |
T |
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| Q |
117 |
gtttggacaaagtgtgaatggtatgaggttttataaaagcttgtatgctcgttaccgcgcaacaaagaagaa |
188 |
Q |
| |
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|||||||||||| ||||||||||||| ||||| ||| | ||||| ||||| || || |||||||||||||| |
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| T |
47944383 |
gtttggacaaagggtgaatggtatgaagttttttaagaacttgtttgctcagtatcgggcaacaaagaagaa |
47944312 |
T |
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