View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6015_low_14 (Length: 282)
Name: NF6015_low_14
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6015_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 4715451 - 4715393
Alignment:
| Q |
214 |
aaattttattgccaccacaatctatggctccaccaataatataaaagctactgatgatg |
272 |
Q |
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| T |
4715451 |
aaattttattgccaccacaatctatggctccaccaataatataaaagctactcatgatg |
4715393 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 41043216 - 41043253
Alignment:
| Q |
125 |
tgatcattttgactctttatagagtcaatggcagcttg |
162 |
Q |
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| T |
41043216 |
tgattattttgactctttatagaatcaatggcagcttg |
41043253 |
T |
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