View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6015_low_16 (Length: 257)
Name: NF6015_low_16
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6015_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 12647248 - 12647019
Alignment:
| Q |
14 |
aaaataaagaagttcaatgcacattgcacatatataactagacaaaaaacatgttaatgtagacatgttcctgcatttgatgcattgcgtgcgacgatat |
113 |
Q |
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| T |
12647248 |
aaaataaagaagttcaatgcacattgcacatatataactagacaaaaaacatgttaatgtagacatgttcctgcatttgatgcattgcgtgcgacgatat |
12647149 |
T |
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| Q |
114 |
ttgaatacaatccctatggaaatggtatatatttgaagatttatctatgtctctgtagttgtaatattctaccaagtaattatcatttatagattcttgg |
213 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12647148 |
ttgaatacaatccctatggaaatggtatagatttgaagatttatctatgtctctgtagttgtaatattctaccaagtaattatcatttatagattctggg |
12647049 |
T |
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| Q |
214 |
agattagtttccatattttgacacaagaag |
243 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12647048 |
agattagtttccatattttgacacaagaag |
12647019 |
T |
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