View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6015_low_19 (Length: 250)
Name: NF6015_low_19
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6015_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 12800708 - 12800944
Alignment:
| Q |
13 |
aatattctcgattaatttccttgtcaagaggtaaatataattatttttgtaagtttcattgagctcgaaggtttttcctgtcttgatggcacat-catcg |
111 |
Q |
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| T |
12800708 |
aatattctcgactaatttccttatcaagaggtaaatataattatttttgtaagtttcattgagctcgaaggtttttcatgtcttgatggcacatacattg |
12800807 |
T |
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| Q |
112 |
cacattttagaattcataaactaaaataccaattgtcaattacaaaagaacagtnnnnnnnnnnnnnnnnngtttaaaactagggcattgcttttgaggt |
211 |
Q |
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| T |
12800808 |
cacattttagaattcataaactaaaataccaattgtcaattacaaaagaaaagt--aaaaaaaaaaaaaaagtttaaaactagggcattgtttttgaggt |
12800905 |
T |
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| Q |
212 |
cataaactagaacatgtaaaatgttgataaacatttttt |
250 |
Q |
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| T |
12800906 |
cataaactagaacatgtaaaatgttgataaacttttttt |
12800944 |
T |
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