View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6015_low_2 (Length: 623)

Name: NF6015_low_2
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6015_low_2
NF6015_low_2
[»] chr1 (9 HSPs)
chr1 (42-623)||(50391761-50392343)
chr1 (325-439)||(11199914-11200030)
chr1 (375-439)||(43834538-43834602)
chr1 (363-438)||(52551269-52551344)
chr1 (403-445)||(39030152-39030194)
chr1 (398-446)||(6356867-6356916)
chr1 (380-444)||(4392238-4392302)
chr1 (367-439)||(11766028-11766100)
chr1 (362-438)||(38637540-38637616)
[»] chr5 (6 HSPs)
chr5 (367-437)||(27856164-27856234)
chr5 (362-445)||(28296072-28296155)
chr5 (375-422)||(18415618-18415665)
chr5 (361-437)||(15159178-15159254)
chr5 (367-437)||(21488819-21488889)
chr5 (373-437)||(33244869-33244933)
[»] chr8 (5 HSPs)
chr8 (398-447)||(19263309-19263358)
chr8 (404-447)||(38291857-38291900)
chr8 (374-439)||(5073024-5073089)
chr8 (365-414)||(2372874-2372923)
chr8 (362-427)||(1418035-1418100)
[»] chr7 (6 HSPs)
chr7 (372-457)||(38116719-38116804)
chr7 (379-447)||(27938807-27938875)
chr7 (372-435)||(25078144-25078207)
chr7 (374-445)||(45100226-45100297)
chr7 (362-439)||(33730103-33730180)
chr7 (398-439)||(6677091-6677132)
[»] chr3 (10 HSPs)
chr3 (398-447)||(50435-50484)
chr3 (378-439)||(42059846-42059907)
chr3 (380-439)||(43978626-43978685)
chr3 (384-437)||(43407680-43407733)
chr3 (373-437)||(37626642-37626706)
chr3 (398-445)||(15863149-15863196)
chr3 (367-409)||(28979035-28979077)
chr3 (383-444)||(23161955-23162016)
chr3 (376-436)||(46954880-46954940)
chr3 (376-444)||(51677343-51677411)
[»] chr2 (7 HSPs)
chr2 (375-444)||(19548187-19548256)
chr2 (375-458)||(8252621-8252704)
chr2 (375-439)||(10066574-10066638)
chr2 (375-447)||(34217580-34217652)
chr2 (373-424)||(40732555-40732606)
chr2 (404-447)||(6467003-6467046)
chr2 (398-447)||(20444184-20444233)
[»] scaffold1743 (1 HSPs)
scaffold1743 (398-447)||(193-242)
[»] chr6 (3 HSPs)
chr6 (376-445)||(14221276-14221345)
chr6 (374-431)||(28940816-28940873)
chr6 (373-422)||(33424561-33424610)
[»] chr4 (6 HSPs)
chr4 (398-447)||(22681170-22681219)
chr4 (375-445)||(11307624-11307694)
chr4 (375-445)||(26986701-26986771)
chr4 (376-436)||(21748248-21748308)
chr4 (404-447)||(42756772-42756815)
chr4 (383-445)||(20090557-20090619)
[»] scaffold0548 (1 HSPs)
scaffold0548 (374-445)||(4113-4184)
[»] scaffold0039 (1 HSPs)
scaffold0039 (374-445)||(29063-29136)


Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 42 - 623
Target Start/End: Complemental strand, 50392343 - 50391761
Alignment:
Q  42 atagcaatatcactcataacaaacctttcactagaaaggcttattgttgaacacccataatattatttattgtggagtttcttgatgtgagagagcaata 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392343 atagcaatatcactcataacaaacctttcactagaaaggcttattgttgaacacccataatattatttattgtggagtttcttgatgtgagagagcaata 50392244  T
Q  142 tccatgatcctgatgatattttcatattagagaaaacattcattgaatgaaaaacaatagaataaatggtagc----aaacaacaaagatagaatgaaga 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    |||||||||||||||||||||||    
T  50392243 tccatgatcctgatgatattttcatattagagaaaacattcattgaatgaaaaagaatagaataaatggtagctagcaaacaacaaagatagaatgaaga 50392144  T
Q  238 ggatgataatatcttaaaaggtatgcattagagaatccatggtggatattatatgattctaatatcacgttgagaactctggtaaaatgttggattttaa 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392143 ggatgataatatcttaaaaggtatgcattagagaatccatggtggatattatatgattctaatatcacgttgagaactctggtaaaatgttggattttaa 50392044  T
Q  338 gtatgagtgtttagtcgcacattgctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 437  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392043 gtatgagtggttagtcgcacattgctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 50391944  T
Q  438 gtcgtgtcaacctctattatgcttcgggaatattaacttatttttgctttataagatattgacttatttccccaacaagtggtattagaacccaaattca 537  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||    |   |   ||||||||||||||||||||||||||||||||||||||    
T  50391943 gtcgtgtcaacctctattatgctccgggaatattgacttatttttgctttcgtcg--ctccccttatttccccaacaagtggtattagaacccaaattca 50391846  T
Q  538 gcttggtgggagcaggattgagatcctagtgtttggatcaagtataagtggtgggaacttacactttgaggggaagattattggtt 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||    
T  50391845 gcttggtgggagcaggattgagatcctagtgtttggatcaagtataagtggtggaaacttacac-ttgaggggaatattattggtt 50391761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 325 - 439
Target Start/End: Original strand, 11199914 - 11200030
Alignment:
Q  325 tgttggattttaagtatgagtgttta-gtcgcacattgc-tataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaag 422  Q
    |||||| |||||||| |||||| ||| ||| |||||||| ||| |||  |||||||||||||||||||||| | ||||||||||| ||||||| ||||||    
T  11199914 tgttgggttttaagtgtgagtggttaagtctcacattgcctatgaataggtaaaatgttggatatataagagaggtgactcatatgcctaatgccttaag 11200013  T
Q  423 gttttggatggagatgt 439  Q
    ||||||| |||||||||    
T  11200014 gttttgggtggagatgt 11200030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 43834538 - 43834602
Alignment:
Q  375 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 439  Q
    |||||||| |||||||||| | | ||| ||||||||||||||||||||||||| |||||||||||    
T  43834538 aaatgttgaatatataagagaggggacccatatacctaatgtcttaaggtttttgatggagatgt 43834602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 363 - 438
Target Start/End: Original strand, 52551269 - 52551344
Alignment:
Q  363 tataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatg 438  Q
    ||||||||||||||||||| ||||||| ||| ||||||| |||||| |||||| ||| || |||| |||| |||||    
T  52551269 tataaatgtgtaaaatgttagatatatgagagatgtgacacatatatctaatgccttgagattttagatgaagatg 52551344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 445
Target Start/End: Original strand, 39030152 - 39030194
Alignment:
Q  403 catatacctaatgtcttaaggttttggatggagatgtcgtgtc 445  Q
    ||||||||||||||||||||||||| | ||||||||| |||||    
T  39030152 catatacctaatgtcttaaggttttaggtggagatgtggtgtc 39030194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 6356916 - 6356867
Alignment:
Q  398 tgactcatatacctaatgtctt-aaggttttggatggagatgtcgtgtca 446  Q
    |||||||||||||| ||||||| |||||||||| ||||||||| ||||||    
T  6356916 tgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 6356867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 4392302 - 4392238
Alignment:
Q  380 ttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 444  Q
    |||||||||||| | | | ||| ||||||||| ||| |||||| |||||||||||||||| ||||    
T  4392302 ttggatatataacagaggagacccatatacctgatgccttaagattttggatggagatgtggtgt 4392238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 439
Target Start/End: Complemental strand, 11766100 - 11766028
Alignment:
Q  367 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 439  Q
    |||| |||||||||||||| ||||||| |  ||||  ||  |||||||| ||||||||||||| |||||||||    
T  11766100 aatgggtaaaatgttggatttataagagagttgacctattaacctaatgccttaaggttttgggtggagatgt 11766028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 438
Target Start/End: Original strand, 38637540 - 38637616
Alignment:
Q  362 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatg 438  Q
    |||||||||  |||||||||||  |||||||  | |||||  |||||||||||| |||||||| |||| ||||||||    
T  38637540 ctataaatggataaaatgttggccatataagtgaggtgacctatatacctaatgccttaaggtattgggtggagatg 38637616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 367 - 437
Target Start/End: Original strand, 27856164 - 27856234
Alignment:
Q  367 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 437  Q
    |||| |||||||||||||||||||||| | ||| ||||||||||||||| ||||| ||||||| |||||||    
T  27856164 aatgggtaaaatgttggatatataagagaggtggctcatatacctaatgccttaaagttttgggtggagat 27856234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 445
Target Start/End: Complemental strand, 28296155 - 28296072
Alignment:
Q  362 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 445  Q
    |||| |||| ||||||| ||| || ||||||| | ||||| |||||||||||| |||||||||||||| ||||||||| |||||    
T  28296155 ctatgaatgagtaaaatattgaatgtataagagaggtgacccatatacctaatctcttaaggttttgggtggagatgtggtgtc 28296072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 18415665 - 18415618
Alignment:
Q  375 aaatgttggatatataagatatgtgactcatatacctaatgtcttaag 422  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||    
T  18415665 aaatgttggatatataagataggagactcataaacctaatgtcttaag 18415618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 15159254 - 15159178
Alignment:
Q  361 gctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 437  Q
    ||||||||||  |||||||||  || ||||||| |||||||||||||| ||||||| || | ||||||| |||||||    
T  15159254 gctataaatggataaaatgttacatgtataagagatgtgactcatatatctaatgttttgaagttttgggtggagat 15159178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 437
Target Start/End: Complemental strand, 21488889 - 21488819
Alignment:
Q  367 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 437  Q
    |||| |||||||||||||||||||||| ||||||| | || || | |||||||||| |||| | |||||||    
T  21488889 aatgagtaaaatgttggatatataagagatgtgacccttaaacttgatgtcttaagatttttggtggagat 21488819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 33244869 - 33244933
Alignment:
Q  373 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 437  Q
    |||||||||||||||||||||||||||| || ||||  ||||   |||| ||||||||| |||||    
T  33244869 taaaatgttggatatataagatatgtgaatcgtatatttaatacattaaagttttggatagagat 33244933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 19263358 - 19263309
Alignment:
Q  398 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 447  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  19263358 tgactcatatacctaatgtcttaaggtttaggatggagatgtggtgtcaa 19263309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 447
Target Start/End: Original strand, 38291857 - 38291900
Alignment:
Q  404 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 447  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  38291857 atatacctaatgtcttaaggttttggatgaagatgtcgtgtcaa 38291900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 374 - 439
Target Start/End: Original strand, 5073024 - 5073089
Alignment:
Q  374 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 439  Q
    |||||||||||||||||||| | | | ||||||||| ||||| ||||||||||||| |||||||||    
T  5073024 aaaatgttggatatataagagaggcgtctcatatacgtaatgccttaaggttttgggtggagatgt 5073089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 2372874 - 2372923
Alignment:
Q  365 taaatgtgtaaaatgttggatatataagatatgtgactcatatacctaat 414  Q
    |||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  2372874 taaatgggtatattgttggatatataagatatgtgactcatatacataat 2372923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 427
Target Start/End: Complemental strand, 1418100 - 1418035
Alignment:
Q  362 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggtttt 427  Q
    |||| |||| ||||||| ||||||||||||||||| ||| ||||||| | ||||| |||| |||||    
T  1418100 ctatgaatgagtaaaatattggatatataagatatttgattcatatatcaaatgttttaaagtttt 1418035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 372 - 457
Target Start/End: Complemental strand, 38116804 - 38116719
Alignment:
Q  372 gtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaacctctattat 457  Q
    ||||||| |||| ||||||||||||||||| | ||||| ||| |||||||||||||||||| |||||| || ||| ||||| ||||    
T  38116804 gtaaaatattggctatataagatatgtgacacgtatacataacgtcttaaggttttggatgaagatgtggtttcatcctctcttat 38116719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 27938807 - 27938875
Alignment:
Q  379 gttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 447  Q
    ||||||||||||||| | | ||||||||||||||| | |||||||||||||||| |||||| |||||||    
T  27938807 gttggatatataagaaaggagactcatatacctaaagccttaaggttttggatgtagatgtggtgtcaa 27938875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 435
Target Start/End: Original strand, 25078144 - 25078207
Alignment:
Q  372 gtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggag 435  Q
    |||||||| | ||||||||||| |||||| |||||||| ||||||||||||||||||| |||||    
T  25078144 gtaaaatgatcgatatataagagatgtgattcatatacataatgtcttaaggttttgggtggag 25078207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 445
Target Start/End: Original strand, 45100226 - 45100297
Alignment:
Q  374 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 445  Q
    ||||||||| |||||||||| |  ||||||||||| |||||||||||| ||||| ||||||||||| |||||    
T  45100226 aaaatgttgaatatataagagagatgactcatataactaatgtcttaaagttttagatggagatgtggtgtc 45100297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 362 - 439
Target Start/End: Complemental strand, 33730180 - 33730103
Alignment:
Q  362 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 439  Q
    |||| |||| || |||||||||||||| |||| | ||||| |||| | ||||||  ||||||||||||||||||||||    
T  33730180 ctatgaatgggttaaatgttggatataaaagagaggtgacccatagagctaatgcattaaggttttggatggagatgt 33730103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 439
Target Start/End: Complemental strand, 6677132 - 6677091
Alignment:
Q  398 tgactcatatacctaatgtcttaaggttttggatggagatgt 439  Q
    ||||||||||||| |||||||||||||||| |||| ||||||    
T  6677132 tgactcatataccaaatgtcttaaggttttagatgaagatgt 6677091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 50435 - 50484
Alignment:
Q  398 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 447  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  50435 tgactcatatacctaatgtcttaaggtttgggatggagatgtggtgtcaa 50484  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 42059907 - 42059846
Alignment:
Q  378 tgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 439  Q
    |||| ||||||||||| | | ||| | |||||||||||||||||||||||||||||||||||    
T  42059907 tgtttgatatataagagaggggacacttatacctaatgtcttaaggttttggatggagatgt 42059846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 43978685 - 43978626
Alignment:
Q  380 ttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 439  Q
    |||||||||||||| | | |||||||||||||| || ||||||||||||| |||||||||    
T  43978685 ttggatatataagagaggagactcatatacctattgccttaaggttttgggtggagatgt 43978626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 43407680 - 43407733
Alignment:
Q  384 atatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 437  Q
    |||||||||| | ||||||||||||||||||| | ||||||||||| |||||||    
T  43407680 atatataagaaaggtgactcatatacctaatgacgtaaggttttgggtggagat 43407733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 37626642 - 37626706
Alignment:
Q  373 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 437  Q
    ||||||||||||||||||||| | || |  |||||||||||||||||||| |||| | |||||||    
T  37626642 taaaatgttggatatataagagaggtcatacatatacctaatgtcttaagattttaggtggagat 37626706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 445
Target Start/End: Original strand, 15863149 - 15863196
Alignment:
Q  398 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 445  Q
    |||||| ||||| |||||||||||||||||| ||||||| ||||||||    
T  15863149 tgactcgtatacttaatgtcttaaggttttgaatggagacgtcgtgtc 15863196  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 409
Target Start/End: Original strand, 28979035 - 28979077
Alignment:
Q  367 aatgtgtaaaatgttggatatataagatatgtgactcatatac 409  Q
    |||||||||||| |||||||||||||| | |||||||||||||    
T  28979035 aatgtgtaaaatattggatatataagagaggtgactcatatac 28979077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 23161955 - 23162016
Alignment:
Q  383 gatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 444  Q
    ||||||||||| | ||||||||||||||  ||| |||||| |||||| ||||||||| ||||    
T  23161955 gatatataagagaggtgactcatatacccgatgccttaagattttgggtggagatgtggtgt 23162016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 46954940 - 46954880
Alignment:
Q  376 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggaga 436  Q
    |||||| |||||||||||||||| |||||||||| ||| || |||| ||||| || |||||    
T  46954940 aatgtttgatatataagatatgtaactcatatacttaacgttttaaagttttagaaggaga 46954880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 444
Target Start/End: Original strand, 51677343 - 51677411
Alignment:
Q  376 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 444  Q
    ||||||||||||| || | |  ||||||||||||||||||||||   ||||||| ||||||||| ||||    
T  51677343 aatgttggatatagaaaagagatgactcatatacctaatgtcttggagttttgggtggagatgtggtgt 51677411  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 375 - 444
Target Start/End: Original strand, 19548187 - 19548256
Alignment:
Q  375 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 444  Q
    ||||||||||||||||||| | | ||| |||||| |||||||||||||||||||| ||||||||| ||||    
T  19548187 aaatgttggatatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgt 19548256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 458
Target Start/End: Complemental strand, 8252704 - 8252621
Alignment:
Q  375 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaacctctattatg 458  Q
    ||||||||||||||||||| | || |||| ||||||||| | ||||| ||||||||||||||||| |||||  ||||| |||||    
T  8252704 aaatgttggatatataagagaggtaactcgtatacctaacgccttaaagttttggatggagatgtggtgtcgccctctcttatg 8252621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 10066574 - 10066638
Alignment:
Q  375 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 439  Q
    ||||||||||||||||||||| | ||  ||||||||||||| |||||| |||||| |||||||||    
T  10066574 aaatgttggatatataagataggagatccatatacctaatgccttaagattttgggtggagatgt 10066638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 34217580 - 34217652
Alignment:
Q  375 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 447  Q
    ||||| ||||||||||||||| |||||| ||||||||||   ||||||||||||||  ||||||| |||||||    
T  34217580 aaatggtggatatataagataggtgacttatatacctaactccttaaggttttggaatgagatgtggtgtcaa 34217652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 40732606 - 40732555
Alignment:
Q  373 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggt 424  Q
    ||||||||| ||||||||||||| ||| || |||||||||||||||||||||    
T  40732606 taaaatgtttgatatataagataagtggcttatatacctaatgtcttaaggt 40732555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Original strand, 6467003 - 6467046
Alignment:
Q  404 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 447  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||    
T  6467003 atataactaatgtcttaagtttttggatggagatgtggtgtcaa 6467046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 20444184 - 20444233
Alignment:
Q  398 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 447  Q
    |||||||||||||||||| |||||||||| ||||| |||| | |||||||    
T  20444184 tgactcatatacctaatgccttaaggtttaggatgaagatatggtgtcaa 20444233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 242 - 193
Alignment:
Q  398 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 447  Q
    ||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  242 tgactcatatatctaatgtcttaaggtttaggatggagatgtggtgtcaa 193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 376 - 445
Target Start/End: Original strand, 14221276 - 14221345
Alignment:
Q  376 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 445  Q
    |||||||||| ||||||| | |||||||||  | ||||||| |||||||||||||||||||||| |||||    
T  14221276 aatgttggatttataagagaggtgactcattaatctaatgtattaaggttttggatggagatgtggtgtc 14221345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 28940873 - 28940816
Alignment:
Q  374 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggat 431  Q
    ||||||||||| |||||||| | | ||||| |||||||||||||||||| ||||||||    
T  28940873 aaaatgttggacatataagagaagagactcgtatacctaatgtcttaagattttggat 28940816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 33424610 - 33424561
Alignment:
Q  373 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaag 422  Q
    ||||||| | ||||||||||| |||||||||||||||| |||||||||||    
T  33424610 taaaatgatagatatataagagatgtgactcatataccaaatgtcttaag 33424561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 22681219 - 22681170
Alignment:
Q  398 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 447  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  22681219 tgactcatatacctaatgtcttaaggtttagggtggagatgtggtgtcaa 22681170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 445
Target Start/End: Complemental strand, 11307694 - 11307624
Alignment:
Q  375 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 445  Q
    ||||||||||||||| ||| | | ||| ||||||||| ||||||||| ||||||| ||||||||| |||||    
T  11307694 aaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtc 11307624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 445
Target Start/End: Complemental strand, 26986771 - 26986701
Alignment:
Q  375 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 445  Q
    |||||||| |||||| ||| |  |||| ||||||| ||||| ||||||||||||||||||||||| |||||    
T  26986771 aaatgttgtatatattagaaaaatgacccatatacataatgccttaaggttttggatggagatgtggtgtc 26986701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 21748248 - 21748308
Alignment:
Q  376 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggaga 436  Q
    ||||||| |||||||| | | ||||||||||| |||||||||||||  |||||||||||||    
T  21748248 aatgttgaatatataaaagacgtgactcatatgcctaatgtcttaaaattttggatggaga 21748308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 42756815 - 42756772
Alignment:
Q  404 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 447  Q
    |||||||||| |||||||||||||||||| |||||| |||||||    
T  42756815 atatacctaaagtcttaaggttttggatgaagatgtggtgtcaa 42756772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 445
Target Start/End: Complemental strand, 20090619 - 20090557
Alignment:
Q  383 gatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 445  Q
    ||||||||||| | |||||| ||||||||||||  ||| |||||||||||| || ||||||||    
T  20090619 gatatataagagaggtgacttatatacctaatgcattagggttttggatggcgacgtcgtgtc 20090557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 374 - 445
Target Start/End: Complemental strand, 4184 - 4113
Alignment:
Q  374 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 445  Q
    |||||||||||||||| ||| | | ||| ||||||||| ||||||||| ||||||| ||||||||| |||||    
T  4184 aaaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtc 4113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 445
Target Start/End: Original strand, 29063 - 29136
Alignment:
Q  374 aaaatgttgg--atatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 445  Q
    ||||||||||  |||||||||| | | |||||||||| || |||||||||| |||||| ||||||||| |||||    
T  29063 aaaatgttggatatatataagagaggggactcatatatctgatgtcttaagattttgggtggagatgtggtgtc 29136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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