View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6015_low_22 (Length: 243)
Name: NF6015_low_22
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6015_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 45 - 228
Target Start/End: Complemental strand, 35047948 - 35047765
Alignment:
| Q |
45 |
tgtgcaaatctgattccattaccatcttttctctaccaatttgtgtatctaattcttgtacggccttgttgaggatttcacggttgttgagaagtaaaca |
144 |
Q |
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| T |
35047948 |
tgtgcaaatctgattccattaccatcttttctctaccaatttgtgtatctaattcttgtacggccttgctgaggatttcacggttgttgagaagtaaaca |
35047849 |
T |
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| Q |
145 |
tagagcccaagttaatgttgatgttgtagtgtctgtgccagctagaattaatgactgcaaatattgtgaaaaatgttttatatt |
228 |
Q |
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| T |
35047848 |
tagagcccaagttaatgttgatgttgtagtgtctgtgccagctagaattaatgactgcaaatattgtgaaaaatgttttatatt |
35047765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 35026359 - 35026203
Alignment:
| Q |
49 |
caaatctgattccattaccatcttttctctaccaatttgtgtatctaattcttgtacggccttgttgaggatttcacggttgttgagaagtaaacataga |
148 |
Q |
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| T |
35026359 |
caaatctgtttgtattgccatcttttccttaccaatttgtgtatctaattcatgaatgactttgtttaggacctcacgattgttaagaagtaaagataga |
35026260 |
T |
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| Q |
149 |
gcccaagttaatgttgatgttgtagtgtctgtgccagctagaattaatgactgcaaa |
205 |
Q |
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| T |
35026259 |
gtccaagtcaatgttcctgctgtagtgtctgtagctgctagaattagtgcctgcaaa |
35026203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 35032305 - 35032149
Alignment:
| Q |
49 |
caaatctgattccattaccatcttttctctaccaatttgtgtatctaattcttgtacggccttgttgaggatttcacggttgttgagaagtaaacataga |
148 |
Q |
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| T |
35032305 |
caaatctgattttattgccatattttccataccaatttgtgtatctaattcttgaatggctttgtttagaacttcaggattgttaagaagtaaagatagt |
35032206 |
T |
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| Q |
149 |
gcccaagttaatgttgatgttgtagtgtctgtgccagctagaattaatgactgcaaa |
205 |
Q |
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| T |
35032205 |
gaccatgtcaatgttcctgcggtagtatctgtagccgctagaattaatgcctgcaaa |
35032149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 35040321 - 35040166
Alignment:
| Q |
50 |
aaatctgattccattaccatcttttctctaccaatttgtgtatctaattcttgtacggccttgttgaggatttcacggttgttgagaagtaaacatagag |
149 |
Q |
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| T |
35040321 |
aaatctgattctattgccatattttccataccaatttgtgtatctaattcttgaatggctttgtttaaaacttcaggattgttaagaagtaaagaaacag |
35040222 |
T |
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| Q |
150 |
cccaagttaatgttgatgttgtagtgtctgtgccagctagaattaatgactgcaaa |
205 |
Q |
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| T |
35040221 |
accaggtcaatgtcgctgcggtagtgtctgtacctgctagaattagtgcctgcaaa |
35040166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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