View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6015_low_25 (Length: 219)
Name: NF6015_low_25
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6015_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 36 - 214
Target Start/End: Complemental strand, 4218616 - 4218438
Alignment:
| Q |
36 |
aatattcatagaaggattggccgtatgaaggttcttattgttcttgatgatattgaggaaaaagatctgctaaggatgttatttggaactcttgattggt |
135 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||| |
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| T |
4218616 |
aatattcatagaaggattgaccgtatgaaggttcttattgttcttgatgatattaaggaagaaggtctgctagagatgttatttggaactcttgattggt |
4218517 |
T |
|
| Q |
136 |
ttcaatctgatagtagaataattgtaataactagagataagcaagtacttattgctaatgaagttgatgatgatgatgt |
214 |
Q |
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||| ||| ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4218516 |
ttcgatccgatagtagaatcattgtaacatctagagataagcaagtacttattgctaatgaagttgatgatgatgatgt |
4218438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 36 - 212
Target Start/End: Complemental strand, 3801559 - 3801383
Alignment:
| Q |
36 |
aatattcatagaaggattggccgtatgaaggttcttattgttcttgatgatattgaggaaaaagatctgctaaggatgttatttggaactcttgattggt |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||| |
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| T |
3801559 |
aatattcatagaaggattggccgtatgaaggttcttattgatcttgatgatattaaggaagaaggtctgctagagatgttatttggaactcttgattggt |
3801460 |
T |
|
| Q |
136 |
ttcaatctgatagtagaataattgtaataactagagataagcaagtacttattgctaatgaagttgatgatgatgat |
212 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||| |||| |||||| |
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| T |
3801459 |
ttcaatctgatagtagaataattgtaacaagtagagataagcaagtacttattcctaatgaagtgtatgacgatgat |
3801383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 45 - 212
Target Start/End: Complemental strand, 4009960 - 4009793
Alignment:
| Q |
45 |
agaaggattggccgtatgaaggttcttattgttcttgatgatattgaggaaaaagatctgctaaggatgttatttggaactcttgattggtttcaatctg |
144 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| || ||||| ||| || |||| |||||||||| |||||||||||||||||| ||| | |
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| T |
4009960 |
agaaggattggtcgtatgaaggttcttattgttcttgatgatgttaaggaagaaggtcagctagagatgttatttagaactcttgattggtttcgatccg |
4009861 |
T |
|
| Q |
145 |
atagtagaataattgtaataactagagataagcaagtacttattgctaatgaagttgatgatgatgat |
212 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4009860 |
atagtagaataattttaacaactagagataagcaagtacttattgctaatgaagttgaagatgatgat |
4009793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 37 - 203
Target Start/End: Complemental strand, 4002271 - 4002105
Alignment:
| Q |
37 |
atattcatagaaggattggccgtatgaaggttcttattgttcttgatgatattgaggaaaaagatctgctaaggatgttatttggaactcttgattggtt |
136 |
Q |
| |
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||||||| || | ||||||||||||||||||||||||||||||||||||| || ||||| ||| || || ||||||||||||||||||||||||||| |
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| T |
4002271 |
atattcagaggatgattggccgtatgaaggttcttattgttcttgatgatgttaaggaagaaggtcaaatagagatgttatttggaactcttgattggtt |
4002172 |
T |
|
| Q |
137 |
tcaatctgatagtagaataattgtaataactagagataagcaagtacttattgctaatgaagttgat |
203 |
Q |
| |
|
|| ||| |||||||| |||||||||| |||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
4002171 |
tcgatccgatagtaggataattgtaacgactagagacaagcaagtacttattactaatgaagttgat |
4002105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 45 - 203
Target Start/End: Complemental strand, 4025190 - 4025032
Alignment:
| Q |
45 |
agaaggattggccgtatgaaggttcttattgttcttgatgatattgaggaaaaagatctgctaaggatgttatttggaactcttgattggtttcaatctg |
144 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| || | || ||||||||||||||| ||||||||| ||| ||||| |
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| T |
4025190 |
agaaggattggccgtatgaaggtccttattgttcttgatgacgttaaggaagaaggtcagatagagatgttatttggaacacttgattggcttctatctg |
4025091 |
T |
|
| Q |
145 |
atagtagaataattgtaataactagagataagcaagtacttattgctaatgaagttgat |
203 |
Q |
| |
|
||||||| |||||||| | ||||||||| | ||||||||||||| ||||||||||||| |
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|
| T |
4025090 |
atagtaggataattgtcacaactagagacatgcaagtacttatttgtaatgaagttgat |
4025032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 3919908 - 3920069
Alignment:
| Q |
49 |
ggattggccgtatgaaggttcttattgttcttgatgatattgaggaaaaagatctgctaaggatgttatttggaactcttgattggtttcaatctgatag |
148 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||||||| | |||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3919908 |
ggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctcgagatgttatttggaactcttgattggtttcaatctgatag |
3920007 |
T |
|
| Q |
149 |
tagaataattgtaataactagagataagcaagtacttattgctaatgaagttgatgatgatg |
210 |
Q |
| |
|
|||||||||| ||| | | ||||||||||||||||| | |||||||||||||| |||||| |
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|
| T |
3920008 |
tagaataattctaacatccagagataagcaagtactaaggactaatgaagttgatcatgatg |
3920069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 212
Target Start/End: Complemental strand, 3817556 - 3817393
Alignment:
| Q |
49 |
ggattggccgtatgaaggttcttattgttcttgatgatattgaggaaaaagatctgctaaggatgttatttggaactcttgattggtttcaatctgatag |
148 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||||||| | |||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3817556 |
ggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctcgagatgttatttggaactcttgattggtttcaatctgatag |
3817457 |
T |
|
| Q |
149 |
tagaataattgtaataactagagataagcaagtacttattgctaatgaagttgatgatgatgat |
212 |
Q |
| |
|
|||||||||| ||| | | ||||||||||||||||| | |||||||||||| ||||||||| |
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|
| T |
3817456 |
tagaataattctaacatccagagataagcaagtactaaggaataatgaagttgaagatgatgat |
3817393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 51 - 212
Target Start/End: Complemental strand, 3986953 - 3986792
Alignment:
| Q |
51 |
attggccgtatgaaggttcttattgttcttgatgatattgaggaaaaagatctgctaaggatgttatttggaactcttgattggtttcaatctgatagta |
150 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||| || |||| |||||| |||| ||||||||| | ||||||||| ||||||||||| ||||||| |
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|
| T |
3986953 |
attggacgcatgaaggttcttatcattcttgatgatgttaaggacgaagatcagctagagatgttattcgaaactcttgactggtttcaatcagatagta |
3986854 |
T |
|
| Q |
151 |
gaataattgtaataactagagataagcaagtacttattgctaatgaagttgatgatgatgat |
212 |
Q |
| |
|
|||||||| ||| | | |||||||||||||||||| ||| |||||||||||| ||||||||| |
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|
| T |
3986853 |
gaataattctaacagccagagataagcaagtactttttgataatgaagttgacgatgatgat |
3986792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 3955723 - 3955815
Alignment:
| Q |
114 |
ttatttggaactcttgattggtttcaatctgatagtagaataattgtaataactagagataagcaagtacttattgctaatgaagttgatgat |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
3955723 |
ttatttggaactcttgattggtttcgatctgatagtagaataattgtaacaattagagacaagcaagtacttattactaatgaagttgatgat |
3955815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 212
Target Start/End: Original strand, 3933132 - 3933295
Alignment:
| Q |
49 |
ggattggccgtatgaaggttcttattgttcttgatgatattgaggaaaaagatctgctaaggatgttatttggaactcttgattggtttcaatctgatag |
148 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||||||||||| | | |||| |||||||||| ||||||||||||| ||||||||||||||| || ||||| |
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|
| T |
3933132 |
ggatcggccgcatgaaagttcttattgttcttgatgatgtcaatgaaacagatctgctagagatgttatttggatctcttgattggtttcgattagatag |
3933231 |
T |
|
| Q |
149 |
tagaataattgtaataactagagataagcaagtacttattgctaatgaagttgatgatgatgat |
212 |
Q |
| |
|
|||||||||||||| | |||| |||||||||| ||| || | |||||||||||| |||||||| |
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|
| T |
3933232 |
tagaataattgtaaccagtagaaataagcaagtgcttgttaccaatgaagttgataatgatgat |
3933295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 49 - 212
Target Start/End: Complemental strand, 3809976 - 3809813
Alignment:
| Q |
49 |
ggattggccgtatgaaggttcttattgttcttgatgatattgaggaaaaagatctgctaaggatgttatttggaactcttgattggtttcaatctgatag |
148 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| | ||| | ||||| ||| | |||||||||| | |||||||||||||| |||||| |
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|
| T |
3809976 |
ggattggccgcatgaaggttcttatcgttcttgatgacgtcaagggtacagatcagctggaaaaattatttggaagttgtgattggtttcaatatgatag |
3809877 |
T |
|
| Q |
149 |
tagaataattgtaataactagagataagcaagtacttattgctaatgaagttgatgatgatgat |
212 |
Q |
| |
|
|||||||||| ||| | | |||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
3809876 |
tagaataattttaacagccagagataagcaagtacttattgctaatgaagttgataaagatgat |
3809813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 3954558 - 3954608
Alignment:
| Q |
36 |
aatattcatagaaggattggccgtatgaaggttcttattgttcttgatgat |
86 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3954558 |
aatattcagagaaggattggccgtatgaaggttcttattgttcttgatgat |
3954608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 37 - 213
Target Start/End: Complemental strand, 13397922 - 13397746
Alignment:
| Q |
37 |
atattcatagaaggattggccgtatgaaggttcttattgttcttgatgatattgaggaaaaagatctgctaaggatgttatttggaactcttgattggtt |
136 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||| || |||| ||| || ||| ||||||||||||||||||||||||||| |
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|
| T |
13397922 |
atattcagagaaggattggccatatgaaggttcttattgttcttgatgatgttacggaagaaggtcagctggagatgttatttggaactcttgattggtt |
13397823 |
T |
|
| Q |
137 |
tcaatctgatagtagaataattgtaataactagagataagcaagtacttattgctaatgaagttgatgatgatgatg |
213 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
13397822 |
tcgatctgatagtagaataattataacaaccagggataagcaagtacttattgctaatgaagttgttgatgatgatg |
13397746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 7030801 - 7030833
Alignment:
| Q |
56 |
ccgtatgaaggttcttattgttcttgatgatat |
88 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
7030801 |
ccgtatgaaggttcttattgttcttgacgatat |
7030833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 7081445 - 7081381
Alignment:
| Q |
118 |
ttggaactcttgattggtttcaatctgatagtagaataattgtaataactagagataagcaagta |
182 |
Q |
| |
|
||||||| |||||||||||| | | | ||||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
7081445 |
ttggaacacttgattggtttggaacaggtagtagaatcattgtaacaactaaagataagcaagta |
7081381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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