View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6015_low_3 (Length: 590)
Name: NF6015_low_3
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6015_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 229 - 572
Target Start/End: Complemental strand, 50391570 - 50391227
Alignment:
| Q |
229 |
cgtgtcttccctttttagatagatatagaaaatatgcatgacaacatattaaatttcatatttacacttttttaagggaaaatttaatatttacacttaa |
328 |
Q |
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| T |
50391570 |
cgtgtcttccctttttagatagatatagaaaatatgcatgacaacatattaaatttcatatttacacttttttaagggaaaatttaatatttacacttaa |
50391471 |
T |
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| Q |
329 |
ttgtggatctatgatctatgatatgatccttaaccatttgccctatttctaagttgtcaccgcatgccgatgctgctgccaactttgtcaccttcttctg |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50391470 |
ttgtggatctatgatctatgatatgatccttaaccatttgccctatttctaagttgtcaccgcatgccgatgctgctgccaactttgtcaccttcttctg |
50391371 |
T |
|
| Q |
429 |
tctttcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataag |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50391370 |
tctttcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataag |
50391271 |
T |
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| Q |
529 |
gttaacaacagcaccaaagaaagttgcagctgcaatgataatga |
572 |
Q |
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| T |
50391270 |
gttaacaacagcaccaaagaaagttgcagctgcaataataatga |
50391227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 50391781 - 50391627
Alignment:
| Q |
18 |
ttgaggggaagattattggttttcaagtgtgagtggttagtcattcataagttcataactaagtttttaagtaatgatttaaatttctattgtactggtg |
117 |
Q |
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| T |
50391781 |
ttgaggggaatattattggttttcaagtgtgagtggttagtcattcataagttcataactaagtttttaagtaatgatttaaatttctattgtagtggtg |
50391682 |
T |
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| Q |
118 |
ttgttcctattttaatgagatttcatagtttttaattattaatttatacaattgt |
172 |
Q |
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| T |
50391681 |
ctgttcctattttaatgagatttcatagtttttaattattaatttatacaattgt |
50391627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 407 - 572
Target Start/End: Complemental strand, 50394666 - 50394501
Alignment:
| Q |
407 |
ccaactttgtcaccttcttctgtctttcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttc |
506 |
Q |
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| T |
50394666 |
ccaattttgtcatcttcttctgtcttacccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttc |
50394567 |
T |
|
| Q |
507 |
ttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaatgataatga |
572 |
Q |
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| T |
50394566 |
tagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatga |
50394501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 334 - 560
Target Start/End: Complemental strand, 50386318 - 50386094
Alignment:
| Q |
334 |
gatctatgatctatgatatgatccttaaccatttgccctatttctaagttgtcaccgcatgccgatgctgctg-ccaactttgtcaccttcttctgtctt |
432 |
Q |
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|||||||||||||| |||| |||||||||||||| |||| ||| |||||||| | ||||| ||||| || |||||||||||| |||| |||||||| |
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| T |
50386318 |
gatctatgatctataatatcgtccttaaccatttgtcctaattccaagttgtcgcaacatgc---tgctgttgaccaactttgtcatcttcctctgtctt |
50386222 |
T |
|
| Q |
433 |
tcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggtta |
532 |
Q |
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| | |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |
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| T |
50386221 |
ttctacgttctttacctccaccatttcagcttcttccctatatctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaa |
50386122 |
T |
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| Q |
533 |
acaacagcaccaaagaaagttgcagctg |
560 |
Q |
| |
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|||||||||||||| || |||||||||| |
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| T |
50386121 |
acaacagcaccaaaaaatgttgcagctg |
50386094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 20755024 - 20755082
Alignment:
| Q |
81 |
tttttaagtaatgatttaaatttctattgtactggtgttgttcctattttaatgagatt |
139 |
Q |
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||||||| |||| ||||||||| ||| ||| ||||||| ||||||||||||||||||| |
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| T |
20755024 |
tttttaattaataatttaaattcctaccgtagtggtgttcttcctattttaatgagatt |
20755082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 19712372 - 19712425
Alignment:
| Q |
460 |
agcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcct |
513 |
Q |
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|||||| |||||| || ||||||||||||||||||| ||||||| ||| ||||| |
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| T |
19712372 |
agcttcctctctgaacttcttgtatatgtcacctttataaaactctctagtcct |
19712425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 18721284 - 18721220
Alignment:
| Q |
100 |
atttctattgtactggtgttgttcctattttaatgagatttca-tagtttttaattattaattta |
163 |
Q |
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|||||||||||| || |||||||||||||||||||||||| | || |||||||||| ||||||| |
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| T |
18721284 |
atttctattgtagtgaggttgttcctattttaatgagatttaactattttttaattaataattta |
18721220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 28013490 - 28013557
Alignment:
| Q |
73 |
taactaagtttttaagtaatgatttaaatttctattgtactggtgttgttcctattttaatgagattt |
140 |
Q |
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| T |
28013490 |
taactaattttttaattaataaattaaattcctattgtaatgatgttgtttcaattttaatgagattt |
28013557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 26054769 - 26054827
Alignment:
| Q |
74 |
aactaagtttttaagtaatgatttaaatttctattgtactggtgttgttcctattttaa |
132 |
Q |
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|||||| ||||||| |||| ||||||||||| ||| || ||||||||||||||||||| |
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| T |
26054769 |
aactaaatttttaattaataatttaaatttccattatagcggtgttgttcctattttaa |
26054827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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