View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6015_low_4 (Length: 545)

Name: NF6015_low_4
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6015_low_4
NF6015_low_4
[»] chr2 (5 HSPs)
chr2 (151-381)||(12042912-12043132)
chr2 (409-473)||(12042851-12042915)
chr2 (288-417)||(12047871-12048010)
chr2 (176-227)||(12048052-12048104)
chr2 (159-202)||(10582343-10582386)
[»] chr7 (2 HSPs)
chr7 (13-153)||(6944948-6945088)
chr7 (13-153)||(48942574-48942714)
[»] chr4 (1 HSPs)
chr4 (13-153)||(18302002-18302142)
[»] chr3 (2 HSPs)
chr3 (13-153)||(13234168-13234308)
chr3 (158-226)||(15800055-15800124)
[»] chr8 (2 HSPs)
chr8 (157-227)||(30198065-30198136)
chr8 (157-202)||(30919420-30919465)
[»] chr1 (1 HSPs)
chr1 (154-201)||(49520009-49520056)
[»] chr5 (3 HSPs)
chr5 (155-195)||(39646270-39646310)
chr5 (157-200)||(8082213-8082255)
chr5 (154-202)||(38340506-38340553)
[»] chr6 (1 HSPs)
chr6 (164-201)||(30863968-30864004)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 151 - 381
Target Start/End: Complemental strand, 12043132 - 12042912
Alignment:
Q  151 acagggattcaatatgagattcatgtccaatatagatacacactagagattcctttcattgaattcaattttgtatctcgataagattcgcatcacatgt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12043132 acagggattcaatatgagattcatgtccaatatagatacacactagagattcctttcattgaattcaattttgtatctcgataagattcgcatcacatgt 12043033  T
Q  251 atcctaagttggacatggtcacagtaccaaacataaaaggatcattcattcattccttcatacttcaaacaaaaataatagcaagctatcaattcacatt 350  Q
    ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12043032 atcctaagttggacatggtc----------acataaaaggatcattcattcattccttcatacttcaaacaaaaataatagcaagctatcaattcacatt 12042943  T
Q  351 atcatggaagcaactaaacagtaattcacct 381  Q
    |||| ||||||||||||||||||||||||||    
T  12042942 atcacggaagcaactaaacagtaattcacct 12042912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 12042915 - 12042851
Alignment:
Q  409 acctatgaaacacgggcacatataccgaacacaacacaaacaccgacaccagtaataatttgaag 473  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  12042915 acctatgaaacacgggcacatataccgaacacaacacaaacatcgacacaagtaataatttgaag 12042851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 288 - 417
Target Start/End: Complemental strand, 12048010 - 12047871
Alignment:
Q  288 aggatcattcattcattccttcatacttcaaacaaaaataatagcaagctatcaattcacattatcatggaagcaactaaa-----------cagtaatt 376  Q
    ||||||||||||||||||||||||  ||||||||||||||| | ||| |||||||||| || | ||| |||||||| ||||           ||||||||    
T  12048010 aggatcattcattcattccttcatttttcaaacaaaaataacaacaaactatcaattcccaatctcaaggaagcaattaaacagtaaatagtcagtaatt 12047911  T
Q  377 cacctcaaattttcacaacatcaaagatggcaacctatgaa 417  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  12047910 cacc-caaattttcacaacatcaaagttggcaacctatgaa 12047871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 12048104 - 12048052
Alignment:
Q  176 tccaatat-agatacacactagagattcctttcattgaattcaattttgtatc 227  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  12048104 tccaatatgagatacacactagagactcctatcattgaattcaattttgtatc 12048052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 10582343 - 10582386
Alignment:
Q  159 tcaatatgagattcatgtccaatatagatacacactagagattc 202  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||    
T  10582343 tcaagatgagattcatgttcaaaatagatacacactagagattc 10582386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 6944948 - 6945088
Alignment:
Q  13 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6944948 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 6945047  T
Q  113 ggtcaaaggatcagagattcattggattatcaaatgataca 153  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6945048 ggtcaaaggatcagagattcattggattatcaaatgataca 6945088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 48942714 - 48942574
Alignment:
Q  13 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48942714 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 48942615  T
Q  113 ggtcaaaggatcagagattcattggattatcaaatgataca 153  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48942614 ggtcaaaggatcagagattcattggattatcaaatgataca 48942574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 18302142 - 18302002
Alignment:
Q  13 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18302142 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 18302043  T
Q  113 ggtcaaaggatcagagattcattggattatcaaatgataca 153  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18302042 ggtcaaaggatcagagattcattggattatcaaatgataca 18302002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 13234308 - 13234168
Alignment:
Q  13 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234308 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 13234209  T
Q  113 ggtcaaaggatcagagattcattggattatcaaatgataca 153  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13234208 ggtcaaaggatcagagattcattggattatcaaatgataca 13234168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 15800124 - 15800055
Alignment:
Q  158 ttcaatatgagattcatgtccaatatagatacacactagagattcctttc-attgaattcaattttgtat 226  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||| | || ||||  |||||||||||||    
T  15800124 ttcaatatgagattcatgtccaaaatagatacacattagggattcgtatcgattgggttcaattttgtat 15800055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 30198136 - 30198065
Alignment:
Q  157 attcaatatgagattcatgtccaatatagatacacactagagattcctttc-attgaattcaattttgtatc 227  Q
    ||||||||||||||| |||| ||| ||||||| ||||||||||||| |||| ||||| |||||||| |||||    
T  30198136 attcaatatgagatttatgttcaaaatagatagacactagagattcgtttcgattgagttcaatttagtatc 30198065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 30919420 - 30919465
Alignment:
Q  157 attcaatatgagattcatgtccaatatagatacacactagagattc 202  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||||    
T  30919420 attcaagatgagattcatgtccaatatagatgcacactaaagattc 30919465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 49520009 - 49520056
Alignment:
Q  154 gggattcaatatgagattcatgtccaatatagatacacactagagatt 201  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  49520009 gggattcgagatgagattcatgtccaaaatagatacacactagagatt 49520056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 39646310 - 39646270
Alignment:
Q  155 ggattcaatatgagattcatgtccaatatagatacacacta 195  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  39646310 ggattcaagatgagattcatgttcaatatagatacacacta 39646270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 8082213 - 8082255
Alignment:
Q  157 attcaatatgagattcatgtccaatatagatacacactagagat 200  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  8082213 attcaagatgagattcatgtccaa-atagatacacactagagat 8082255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 38340506 - 38340553
Alignment:
Q  154 gggattcaatatgagattcatgtccaatatagatacacactagagattc 202  Q
    ||||||||  ||| ||||||||||||| |||||||||||||||||||||    
T  38340506 gggattcacaatgggattcatgtccaa-atagatacacactagagattc 38340553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 30863968 - 30864004
Alignment:
Q  164 atgagattcatgtccaatatagatacacactagagatt 201  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  30863968 atgagattcatgtccaa-atagatacacactagagatt 30864004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University