View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6015_low_6 (Length: 523)
Name: NF6015_low_6
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6015_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 45 - 258
Target Start/End: Complemental strand, 35047948 - 35047735
Alignment:
| Q |
45 |
tgtgcaaatctgattccattaccatcttttctctaccaatttgtgtatctaattcttgtacggccttgttgaggatttcacggttgttgagaagtaaaca |
144 |
Q |
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| T |
35047948 |
tgtgcaaatctgattccattaccatcttttctctaccaatttgtgtatctaattcttgtacggccttgctgaggatttcacggttgttgagaagtaaaca |
35047849 |
T |
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| Q |
145 |
tagagcccaagttaatgttgatgttgtagtgtctgtgccagctagaattaatgactgcaaatattgtgaaaaatgttttatatttttagacttccttgtt |
244 |
Q |
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| T |
35047848 |
tagagcccaagttaatgttgatgttgtagtgtctgtgccagctagaattaatgactgcaaatattgtgaaaaatgttttatatttttagacttccttgtt |
35047749 |
T |
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| Q |
245 |
agtttaattgagag |
258 |
Q |
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|||||||||||||| |
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| T |
35047748 |
agtttaattgagag |
35047735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 330 - 511
Target Start/End: Complemental strand, 35047662 - 35047481
Alignment:
| Q |
330 |
gacaaatgatgcaaactatgattcaagtcttcgtcttcttgtgtccaataaaagatcacaattcaaatatttgggcgcaaagaatgaatcaaatcgatca |
429 |
Q |
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| T |
35047662 |
gacaaatgatgcaaactatgattcaagtcttcgtcttcttgtgtccaataaaagatcacaattcaaatatttgggcgcaaagaatgaatcaaatcgatca |
35047563 |
T |
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| Q |
430 |
acaaaaatatctaaattctcaaagccaaccttgtgaaaatcaactctatgctaataatacttatacttttttaatttatgat |
511 |
Q |
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| T |
35047562 |
acaaaaatatctaaattctcaaagacaaccttgtgaaaatcaactctatgctaataatacttatacttttttaatttatgat |
35047481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 35026359 - 35026203
Alignment:
| Q |
49 |
caaatctgattccattaccatcttttctctaccaatttgtgtatctaattcttgtacggccttgttgaggatttcacggttgttgagaagtaaacataga |
148 |
Q |
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|||||||| || ||| |||||||||| |||||||||||||||||||||| || | | | ||||| |||| ||||| ||||| ||||||||| ||||| |
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| T |
35026359 |
caaatctgtttgtattgccatcttttccttaccaatttgtgtatctaattcatgaatgactttgtttaggacctcacgattgttaagaagtaaagataga |
35026260 |
T |
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| Q |
149 |
gcccaagttaatgttgatgttgtagtgtctgtgccagctagaattaatgactgcaaa |
205 |
Q |
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| T |
35026259 |
gtccaagtcaatgttcctgctgtagtgtctgtagctgctagaattagtgcctgcaaa |
35026203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 35032305 - 35032149
Alignment:
| Q |
49 |
caaatctgattccattaccatcttttctctaccaatttgtgtatctaattcttgtacggccttgttgaggatttcacggttgttgagaagtaaacataga |
148 |
Q |
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| T |
35032305 |
caaatctgattttattgccatattttccataccaatttgtgtatctaattcttgaatggctttgtttagaacttcaggattgttaagaagtaaagatagt |
35032206 |
T |
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| Q |
149 |
gcccaagttaatgttgatgttgtagtgtctgtgccagctagaattaatgactgcaaa |
205 |
Q |
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| ||| || |||||| || ||||| ||||| | ||||||||||||| ||||||| |
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| T |
35032205 |
gaccatgtcaatgttcctgcggtagtatctgtagccgctagaattaatgcctgcaaa |
35032149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 35040321 - 35040166
Alignment:
| Q |
50 |
aaatctgattccattaccatcttttctctaccaatttgtgtatctaattcttgtacggccttgttgaggatttcacggttgttgagaagtaaacatagag |
149 |
Q |
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||||||||||| ||| |||| ||||| ||||||||||||||||||||||||| | ||| ||||| | | |||| | ||||| ||||||||| | | || |
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| T |
35040321 |
aaatctgattctattgccatattttccataccaatttgtgtatctaattcttgaatggctttgtttaaaacttcaggattgttaagaagtaaagaaacag |
35040222 |
T |
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| Q |
150 |
cccaagttaatgttgatgttgtagtgtctgtgccagctagaattaatgactgcaaa |
205 |
Q |
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||| || ||||| | || ||||||||||| || |||||||||| || ||||||| |
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| T |
35040221 |
accaggtcaatgtcgctgcggtagtgtctgtacctgctagaattagtgcctgcaaa |
35040166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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