View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6015_low_7 (Length: 493)
Name: NF6015_low_7
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6015_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 243 - 478
Target Start/End: Original strand, 12801374 - 12801612
Alignment:
| Q |
243 |
aaccaatttgagcagctttttgaagcaatgcagttgccgacatatgtggcgaagacaacatgttctcttgttg---catggatgaattaccaaagagtga |
339 |
Q |
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| T |
12801374 |
aaccaatttgagcagctttttgaagcaatgcagttgccgacatgtgtggcgaagacaacatgttctcttgttgttgcattgatgaattaccaaagagtga |
12801473 |
T |
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| Q |
340 |
agaaaaaccatcatgttgttgatgatgatgagattcacttatgttgttgaattgatcatgcattgtgttgttaccattggtatttggaaagaagcttagg |
439 |
Q |
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| T |
12801474 |
agaaaaaccttcatgatgttgatgatgatgagattcacttatgttgttgaattgatcatgcattgtgttgttaccattggtatttggaaagaagcttagg |
12801573 |
T |
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| Q |
440 |
ttaaaaggcgataccgatgaagaagttgtgttgttattg |
478 |
Q |
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| T |
12801574 |
ttaaaaggcgataccgacgaagaagttgtgttgttattg |
12801612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 12801141 - 12801309
Alignment:
| Q |
10 |
aagaaaatccaaagtcaatttatctgatcctccaaagcacaaattaccaactagactttgttgtgacgatgacatctttttattctcatcctcaacattg |
109 |
Q |
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| T |
12801141 |
aagaaaatccaaagtcaatttatctgatcctccaaagcacaaattaccaactagactttgttgtgacgatgacatctttttattctcatcctcaacattg |
12801240 |
T |
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| Q |
110 |
tgaaactgaccaagattattgttatcatatattgaagtgtttccattcccaagagagttcatcaatcca |
178 |
Q |
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| T |
12801241 |
tgaaactgaccaaggttattgttatcatatattgaagtgtttccattcccaagagagttcatcaatcca |
12801309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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