View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6015_low_8 (Length: 403)
Name: NF6015_low_8
Description: NF6015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6015_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 48 - 392
Target Start/End: Original strand, 20170464 - 20170804
Alignment:
| Q |
48 |
ttaagctcctaaatatgtggccatgctttcttatatgattcataaatctataaattcaatgtatagtaatgccacttacatttaaaaccatataattaac |
147 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20170464 |
ttaagctcctaaatatgtggccatactttcttatatgattcataaatctataaattcaatgtatagtaatgccacttacatttaaaagcatataattaac |
20170563 |
T |
|
| Q |
148 |
tcacaattaaagtcttcgtatcatttcacaaaggagttttatttttaaacacccaaacaatcaatctacttcttgagagaaaaagatataatatactaat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20170564 |
tcacaattaaagtcttcgtatcatttcacaaaggagttttatttttaaatacccaaacaatcaatctacatcttgagagaaaaagatataatatactaat |
20170663 |
T |
|
| Q |
248 |
atatgtgataggttgataacatgatatgaaatgagagatggagataaaatgatgcgttgaatgagtgttgaaaatttaagaatgtttaaattaatataag |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20170664 |
atatgtgataggttgataacatgatatgaaatgagagatggagataaaataaggcgttgaatgagtgttgaaaatttaagaatgttta----aatataag |
20170759 |
T |
|
| Q |
348 |
tgttctttcaaaaacattgagtaagcaagacagatcatcattcat |
392 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20170760 |
tgttctttcaaaaacatcgagtaagcaagacagatcatcattcat |
20170804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20170433 - 20170466
Alignment:
| Q |
1 |
ctaggataccatgttggttacttcatcaaggtta |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
20170433 |
ctaggataccatgttggttacttcatcaaggtta |
20170466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 48 - 392
Target Start/End: Original strand, 44392174 - 44392514
Alignment:
| Q |
48 |
ttaagctcctaaatatgtggccatgctttcttatatgattcataaatctataaattcaatgtatagtaatgccacttacatttaaaaccatataattaac |
147 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44392174 |
ttaagctcctaaatatgtggccatactttcttatatgattcataaatctataaattcaatgtatagtaatgccacttacatttaaaagcatataattaac |
44392273 |
T |
|
| Q |
148 |
tcacaattaaagtcttcgtatcatttcacaaaggagttttatttttaaacacccaaacaatcaatctacttcttgagagaaaaagatataatatactaat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44392274 |
tcacaattaaagtcttcgtatcatttcacaaaggagttttatttttaaatacccaaacaatcaatctacatcttgagagaaaaagatataatatactaat |
44392373 |
T |
|
| Q |
248 |
atatgtgataggttgataacatgatatgaaatgagagatggagataaaatgatgcgttgaatgagtgttgaaaatttaagaatgtttaaattaatataag |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44392374 |
atatgtgataggttgataacatgatatgaaatgagagatggagataaaataaggcgttgaatgagtgttgaaaatttaagaatgttta----aatataag |
44392469 |
T |
|
| Q |
348 |
tgttctttcaaaaacattgagtaagcaagacagatcatcattcat |
392 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44392470 |
tgttctttcaaaaacatcgagtaagcaagacagatcatcattcat |
44392514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 44392143 - 44392176
Alignment:
| Q |
1 |
ctaggataccatgttggttacttcatcaaggtta |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
44392143 |
ctaggataccatgttggttacttcatcaaggtta |
44392176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University