View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_high_1 (Length: 825)
Name: NF6016_high_1
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 632; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 18 - 813
Target Start/End: Complemental strand, 35734167 - 35733391
Alignment:
| Q |
18 |
gctatatctctgccacaattagaccatacttgtgagttgctatgatctcattattcatcaattatatgtcaattcttttttgtaaacaatgactttatga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35734167 |
gctatatctctgccacaattagaccatacttgtgagttgctatgatctcattattcatcaattatatgtcaattcttttttgtaaacaatgactttatga |
35734068 |
T |
|
| Q |
118 |
tgcactttc-ttttagagctttcttcagacattgttttggcttttgagtaggggctttagagtttccctttttcttcaaataaacacacacaaatgggac |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35734067 |
tgcactttcattttagagctttcttcagacattgttttggcttttgagtaggggctttagagtttccctttttcttcaaataaacacacacaaatgggac |
35733968 |
T |
|
| Q |
217 |
cttaatccattaaaaacaatatgttttattgatgttaacttaannnnnnngttgttt-cagtttatgggctgatctcctatttttcgaacaagctgctct |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35733967 |
cttaatccattaaaaacaatatgttttattgatgttaacttaatttttttgtttttttcagtttatgggctgatctcctatttttcgaacaagctgctct |
35733868 |
T |
|
| Q |
316 |
tggtttattaagagtcgaagtccatgttttatcttattgtggaatccttcatttcttaaggggaactatttgtcaagaagagatggatattgttgttggt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35733867 |
tggtttattaagagtcgaagtccatgttttatcttattgtggaatccttcatttcttaaggggaactattggtcaagaagagatggatattgttgttggt |
35733768 |
T |
|
| Q |
416 |
aaagtgatcttcctaaactattctaaactgtttttggtcatgtaaattcctacatcgtttgtgatcgctacaaattttttaacaatcagcttgcttggta |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35733767 |
aaagtgatcttcctaaactattctaaactgtttttggtcatgtaaattcctacatcgtttgtgatcgctacaaattttttaacaatcagcctgcttggta |
35733668 |
T |
|
| Q |
516 |
gaatgaaattaacaaattacttgtagctagccttaacaaatgacttatgtaaattccaataaagtgtatgattgctacaatttaannnnnnngggagtgt |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35733667 |
gaatgaaattaacaaattacttgtagctagccttaacaaatgacttatgtaaattccaataaagtgtatgattgctacaatttaatttttttgggagtgt |
35733568 |
T |
|
| Q |
616 |
ctttgtgatttactggctcagtgaacttgaagagaggttgcnnnnnnnattgtatgtatcctaccttattttctttgctcaaactttttaatcgtattgt |
715 |
Q |
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| T |
35733567 |
ctttgtgatttactggctcagtgaacttgaagagaggttgc-ttttttattgtatgtatcctaccttattttctttgctcaaactttttaatcgt----- |
35733474 |
T |
|
| Q |
716 |
gcattgtgcattgtgcatacatcaaaatggctctggctgattaaaatgtagaccaagtgttgacttgttacaggacaggaggaatagtttaaccttat |
813 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35733473 |
--attgtgcattgtgcatacatc-------------ctgattaaaatgtagaccaagtgttgacttgttacaggacaggaggaatagtttaaccttat |
35733391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 35760632 - 35760732
Alignment:
| Q |
151 |
ttttggcttttgagtaggggctttagagtttccctttttcttcaaataaaca--cacacaaatgggaccttaatccattaaaaacaatatgttttattga |
248 |
Q |
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|||| |||| |||||||| |||| || |||||||||||| ||||||||||| | ||||||||| |||||| ||||||||| | |||||||||||||| |
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| T |
35760632 |
ttttagcttctgagtaggaacttttgaatttccctttttcatcaaataaacactcgcacaaatggaaccttagtccattaaataggatatgttttattga |
35760731 |
T |
|
| Q |
249 |
t |
249 |
Q |
| |
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| |
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| T |
35760732 |
t |
35760732 |
T |
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