View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6016_high_15 (Length: 426)

Name: NF6016_high_15
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6016_high_15
NF6016_high_15
[»] chr8 (13 HSPs)
chr8 (4-410)||(18757609-18758021)
chr8 (17-303)||(27907153-27907438)
chr8 (17-303)||(27953572-27953857)
chr8 (17-303)||(27894914-27895199)
chr8 (146-411)||(28502571-28502850)
chr8 (146-411)||(28510129-28510408)
chr8 (320-411)||(27895230-27895321)
chr8 (320-411)||(27907469-27907560)
chr8 (320-411)||(27953888-27953979)
chr8 (139-272)||(28502484-28502610)
chr8 (139-272)||(28510042-28510168)
chr8 (8-99)||(28502385-28502475)
chr8 (8-99)||(28509943-28510033)
[»] chr3 (4 HSPs)
chr3 (13-303)||(49433040-49433328)
chr3 (17-303)||(23007316-23007601)
chr3 (304-409)||(49432904-49433009)
chr3 (304-411)||(23007177-23007284)
[»] chr7 (14 HSPs)
chr7 (8-411)||(17719067-17719489)
chr7 (17-303)||(13820367-13820652)
chr7 (17-281)||(12512048-12512311)
chr7 (17-281)||(12768258-12768522)
chr7 (17-295)||(4809642-4809919)
chr7 (304-411)||(13820228-13820335)
chr7 (113-281)||(24859452-24859613)
chr7 (244-411)||(12512330-12512499)
chr7 (214-411)||(24859220-24859439)
chr7 (214-303)||(4809918-4810008)
chr7 (304-400)||(12768657-12768753)
chr7 (304-411)||(4810040-4810147)
chr7 (214-280)||(12768535-12768602)
chr7 (237-295)||(24859518-24859576)
[»] chr1 (4 HSPs)
chr1 (8-411)||(26084199-26084615)
chr1 (304-411)||(23859945-23860052)
chr1 (214-299)||(23859833-23859919)
chr1 (8-65)||(24636883-24636940)
[»] chr6 (6 HSPs)
chr6 (8-300)||(24688813-24689097)
chr6 (17-281)||(7410473-7410737)
chr6 (304-411)||(24678530-24678637)
chr6 (304-400)||(7410872-7410968)
chr6 (304-411)||(24689122-24689229)
chr6 (214-280)||(7410750-7410817)
[»] chr5 (6 HSPs)
chr5 (17-303)||(23761326-23761611)
chr5 (17-303)||(23826787-23827072)
chr5 (312-411)||(23761186-23761285)
chr5 (312-411)||(23826647-23826746)
chr5 (237-304)||(23761405-23761472)
chr5 (237-304)||(23826866-23826933)
[»] scaffold0594 (2 HSPs)
scaffold0594 (17-302)||(6880-7164)
scaffold0594 (304-398)||(6753-6847)
[»] scaffold0624 (1 HSPs)
scaffold0624 (66-411)||(2234-2593)
[»] chr2 (7 HSPs)
chr2 (8-411)||(38850614-38851030)
chr2 (17-281)||(40064748-40065011)
chr2 (17-281)||(23740898-23741162)
chr2 (150-400)||(40064549-40064792)
chr2 (317-411)||(23740656-23740750)
chr2 (214-303)||(23740795-23740885)
chr2 (320-411)||(35336461-35336552)
[»] chr4 (8 HSPs)
chr4 (17-281)||(52480548-52480812)
chr4 (42-196)||(54956997-54957158)
chr4 (226-303)||(22326638-22326715)
chr4 (209-303)||(54957224-54957319)
chr4 (304-411)||(52480946-52481053)
chr4 (214-303)||(52480825-52480914)
chr4 (8-110)||(22326805-22326906)
chr4 (304-400)||(54957351-54957447)
[»] scaffold0427 (2 HSPs)
scaffold0427 (221-300)||(10-89)
scaffold0427 (304-411)||(114-221)
[»] scaffold1414 (1 HSPs)
scaffold1414 (321-400)||(1-80)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 4 - 410
Target Start/End: Complemental strand, 18758021 - 18757609
Alignment:
Q  4 atgcgagtgaagagttgtatatttatacacagagatgttgcaacggtaacaaacggctagtttgggtcccgtgttttccgacgaaattttcgtaggtaat 103  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18758021 atgcgagtgaggagttgtatatttatacacagagatgctgcaacggtaacaaacggctagtttgggtcccgtgttttccgacgaaattttcataggtaat 18757922  T
Q  104 ttccaccaatcacaaccagccacacaccctttattcaacggctttctgcatgtgg--------------ggccgcaactttcctaggaaatattcgtcag 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||  ||||||||||||||||||||| |    
T  18757921 ttccaccaatcacaaccagccacacaccctttattcaacggctttctgcatgtggctttctgcatgtggggccgcggctttcctaggaaatattcgtcgg 18757822  T
Q  190 taaagtacgccaatcccaatatcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagcca 289  Q
    ||||||||||||||||||        |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  18757821 taaagtacgccaatccca--------tgcttccacaagccctttttctgcatgtggggccgccgctttcctaggaaagtattcctcggtaaaggcagcca 18757730  T
Q  290 atcacaagctgccattttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgt 389  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  18757729 atcacaagctgccattttactgacaggtgctttccaacgaaaatttcgtcgctaatttgtaggaaactactttctaagaaatttcgtcggaaaattttgt 18757630  T
Q  390 aggaaaatccaatatttcttg 410  Q
    |||||||||||||||||||||    
T  18757629 aggaaaatccaatatttcttg 18757609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 27907153 - 27907438
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||||||      ||||||||||||||||||||||||||||| |||||||||||||||    
T  27907153 gttgtatatttatagacacagatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcttaggtaatttccacc 27907252  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctagg-aaatattcgtcagtaaagtacgccaatcccaat 209  Q
    |||||||||||  ||||||| |||||| |||||| | | |||||| ||||||||| |||||||||| |||||||| || |||||| |  |||            
T  27907253 aatcacaaccatacacacacgctttatccaacggttgtgtgcatgcggggccgcagctttcctaggaaaatattcctcggtaaaggagccca-------- 27907344  T
Q  210 atcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca 303  Q
    ||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||| ||||||| ||| || |||||||||||||    
T  27907345 atcacatgcttccacacaccctttttctgcaagtggggccgccgctttcctaggaaattattcctcggtaaagtcagtcattcacaagctgcca 27907438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 27953572 - 27953857
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||||||      ||||||||||||||||||||||||||||| |||||||||||||||    
T  27953572 gttgtatatttatagacacagatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcttaggtaatttccacc 27953671  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctagg-aaatattcgtcagtaaagtacgccaatcccaat 209  Q
    |||||||||||  ||||||| |||||| |||||| | | |||||| ||||||||| |||||||||| |||||||| || |||||| |  |||            
T  27953672 aatcacaaccatacacacacgctttatccaacggttgtgtgcatgcggggccgcagctttcctaggaaaatattcctcggtaaaggagccca-------- 27953763  T
Q  210 atcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca 303  Q
    ||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||| ||||||| ||| || |||||||||||||    
T  27953764 atcacatgcttccacacaccctttttctgcaagtggggccgccgctttcctaggaaattattcctcggtaaagtcagtcattcacaagctgcca 27953857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 27894914 - 27895199
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    |||||||||||||| ||| | ||| ||||||||||||||||||||||||      ||||||||||||||||||||||||||||| |||||||||||||||    
T  27894914 gttgtatatttataaacacaaatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcttaggtaatttccacc 27895013  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctagg-aaatattcgtcagtaaagtacgccaatcccaat 209  Q
    |||||||||||  ||||||| |||||| |||||| | | |||||| ||||||||| |||||||||| |||||||| || |||||| |  |||            
T  27895014 aatcacaaccatacacacacgctttatccaacggttgtgtgcatgcggggccgcagctttcctaggaaaatattcctcggtaaaggagccca-------- 27895105  T
Q  210 atcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca 303  Q
    ||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||| ||||||| ||| || |||||||||||||    
T  27895106 atcacatgcttccacacaccctttttctgcaagtggggccgccgctttcctaggaaattattcctcggtaaagtcagtcattcacaagctgcca 27895199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 146 - 411
Target Start/End: Original strand, 28502571 - 28502850
Alignment:
Q  146 tttctgcatgtggggccgcaactttcctaggaaa-tattcgtcagtaaagtacgccaatcccaatatcccatgcttccacacgccctttttctgcatgtg 244  Q
    ||||||||| |||||||||||||||||||||||| |||||||| |||| ||| ||||||| ||        |||| ||||  ||||||||||||||||||    
T  28502571 tttctgcatctggggccgcaactttcctaggaaaatattcgtcggtaacgtaggccaatcaca--------tgctcccacgtgccctttttctgcatgtg 28502662  T
Q  245 gggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca---------------------ttttacttacaggtgctttc 323  Q
    ||||||| |||||| ||||||||||||||| ||||||  ||||||||||||||||||||                     ||||||| ||| ||||||||    
T  28502663 gggccgctgctttcctaggaaagtattcctcggtaaaatcagccaatcacaagctgccacgccccacttttcttgtccttttttactgacatgtgctttc 28502762  T
Q  324 caacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaatatttcttgt 411  Q
    | ||||||||||||||||||||| |||||||||   |||||  |||||||||||| |||  ||||||||||||| |||||||||||||    
T  28502763 ctacgaaaatttcgtcgctaatttgtaggaaacctttttctaggaaatttcgtcggaaatctttgtaggaaaattcaatatttcttgt 28502850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 146 - 411
Target Start/End: Original strand, 28510129 - 28510408
Alignment:
Q  146 tttctgcatgtggggccgcaactttcctaggaaa-tattcgtcagtaaagtacgccaatcccaatatcccatgcttccacacgccctttttctgcatgtg 244  Q
    ||||||||| |||||||||||||||||||||||| |||||||| |||| ||| ||||||| ||        |||| ||||  ||||||||||||||||||    
T  28510129 tttctgcatctggggccgcaactttcctaggaaaatattcgtcggtaacgtaggccaatcaca--------tgctcccacgtgccctttttctgcatgtg 28510220  T
Q  245 gggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca---------------------ttttacttacaggtgctttc 323  Q
    ||||||| |||||| ||||||||||||||| ||||||  ||||||||||||||||||||                     ||||||| ||| ||||||||    
T  28510221 gggccgctgctttcctaggaaagtattcctcggtaaaatcagccaatcacaagctgccacgccccacttttcttgtccttttttactgacatgtgctttc 28510320  T
Q  324 caacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaatatttcttgt 411  Q
    | ||||||||||||||||||||| |||||||||   |||||  |||||||||||| |||  ||||||||||||| |||||||||||||    
T  28510321 ctacgaaaatttcgtcgctaatttgtaggaaacctttttctaggaaatttcgtcggaaatctttgtaggaaaattcaatatttcttgt 28510408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 320 - 411
Target Start/End: Original strand, 27895230 - 27895321
Alignment:
Q  320 tttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaatatttcttgt 411  Q
    ||||| |||||||||||||||| |||||||||||||    |||||  |||||||||||| ||| |||||||||||||||||  |||||||||    
T  27895230 tttccgacgaaaatttcgtcgcaaattcgtaggaaaacggtttctaggaaatttcgtcggaaagttttgtaggaaaatccaccatttcttgt 27895321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 320 - 411
Target Start/End: Original strand, 27907469 - 27907560
Alignment:
Q  320 tttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaatatttcttgt 411  Q
    ||||| |||||||||||||||| |||||||||||||    |||||  |||||||||||| ||| |||||||||||||||||  |||||||||    
T  27907469 tttccgacgaaaatttcgtcgcaaattcgtaggaaaacggtttctaggaaatttcgtcggaaagttttgtaggaaaatccaccatttcttgt 27907560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 320 - 411
Target Start/End: Original strand, 27953888 - 27953979
Alignment:
Q  320 tttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaatatttcttgt 411  Q
    ||||| |||||||||||||||| |||||||||||||    |||||  |||||||||||| ||| |||||||||||||||||  |||||||||    
T  27953888 tttccgacgaaaatttcgtcgcaaattcgtaggaaaacggtttctaggaaatttcgtcggaaagttttgtaggaaaatccaccatttcttgt 27953979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 272
Target Start/End: Original strand, 28502484 - 28502610
Alignment:
Q  139 caacggctttctgcatgtggggccgcaactttcctagg-aaatattcgtcagtaaagtacgccaatcccaatatcccatgcttccacacgccctttttct 237  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||  || ||||        ||| ||||||  ||| ||||||||||||    
T  28502484 caacggctttctgcatgtggggccgcagctttcctaggaaaatattcgtcggtaacataagcca--------atcacatgctctcacgcgccctttttct 28502575  T
Q  238 gcatgtggggccgccgctttcttaggaaagtattc 272  Q
    |||| |||||||||  ||||| ||||||| |||||    
T  28502576 gcatctggggccgcaactttcctaggaaaatattc 28502610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 272
Target Start/End: Original strand, 28510042 - 28510168
Alignment:
Q  139 caacggctttctgcatgtggggccgcaactttcctagg-aaatattcgtcagtaaagtacgccaatcccaatatcccatgcttccacacgccctttttct 237  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||  || ||||        ||| ||||||  ||| ||||||||||||    
T  28510042 caacggctttctgcatgtggggccgcagctttcctaggaaaatattcgtcggtaacataagcca--------atcacatgctctcacgcgccctttttct 28510133  T
Q  238 gcatgtggggccgccgctttcttaggaaagtattc 272  Q
    |||| |||||||||  ||||| ||||||| |||||    
T  28510134 gcatctggggccgcaactttcctaggaaaatattc 28510168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 28502385 - 28502475
Alignment:
Q  8 gagtgaagagttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtagg 99  Q
    |||||||||||||||||||||||       ||| ||||||||||||||||| ||||||      ||||||||||||||||||||||||||||||||||    
T  28502385 gagtgaagagttgtatatttata-------atgctgcaacggtaacaaacgactagttagaatgtgggtcccgtgttttccgacgaaattttcgtagg 28502475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 28509943 - 28510033
Alignment:
Q  8 gagtgaagagttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtagg 99  Q
    |||||||||||||||||||||||       ||| ||||||||||||||||| ||||||      ||||||||||||||||||||||||||||||||||    
T  28509943 gagtgaagagttgtatatttata-------atgctgcaacggtaacaaacgactagttagaatgtgggtcccgtgttttccgacgaaattttcgtagg 28510033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 13 - 303
Target Start/End: Complemental strand, 49433328 - 49433040
Alignment:
Q  13 aagagttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttc 106  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||||||||||||      |||||||||||||||||||||||||||||||||||||| ||    
T  49433328 aagagttgtatatttatactcagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcgtaggtaatgtc 49433230  T
Q  107 caccaatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctagg-aaatattcgtcagtaaagtacgccaatcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| |||||||| ||||        
T  49433229 caccaatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgtagctttcctaggaaaatattcgtcggtaaagtaggcca---- 49433134  T
Q  206 caatatcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca 303  Q
        ||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  49433133 ----atcccatgctttcacgcgctctttttctgcatgtggggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgcca 49433040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 23007601 - 23007316
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||      |||||||||||||||||||||||||||||||| ||||||||||||    
T  23007601 gttgtatatttatacacacagatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcgtatgtaatttccacc 23007502  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctagg-aaatattcgtcagtaaagtacgccaatcccaat 209  Q
    |||||||||||  |||||||||||||| ||||| || | |||||||||||||||| |||||||||| |||||||| || |||||||| | ||            
T  23007501 aatcacaaccatacacacaccctttatccaacgactgtgtgcatgtggggccgcagctttcctaggaaaatattcctcggtaaagtaggtca-------- 23007410  T
Q  210 atcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca 303  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |||||| |||||||||||||    
T  23007409 atcacatgcttccacacaccctttttctgcatgtggggccgccgctttcctaggaaattattcctcggtaaagtcagccattcacaagctgcca 23007316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 304 - 409
Target Start/End: Complemental strand, 49433009 - 49432904
Alignment:
Q  304 ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaata 403  Q
    ||||||| ||| ||||||||| ||||||| |||||||||||||||||||||||||||||||  |||| ||||||| |||||||||||| |||||| ||||    
T  49433009 ttttactgacaagtgctttccgacgaaaacttcgtcgctaattcgtaggaaactactttctaggaaacttcgtcgtaaaattttgtagaaaaatctaata 49432910  T
Q  404 tttctt 409  Q
    ||||||    
T  49432909 tttctt 49432904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 304 - 411
Target Start/End: Complemental strand, 23007284 - 23007177
Alignment:
Q  304 ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaata 403  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||||||||||  ||||||  |||||||||||| ||| ||||||||||||||| | ||    
T  23007284 ttttactgacagttgctttccgacgaaaatttcgtcgctaattcgtaggaaaccgctttctaggaaatttcgtcggaaagttttgtaggaaaatctagta 23007185  T
Q  404 tttcttgt 411  Q
    ||||||||    
T  23007184 tttcttgt 23007177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 8 - 411
Target Start/End: Complemental strand, 17719489 - 17719067
Alignment:
Q  8 gagtgaagagttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggta 101  Q
    |||||||||||||||||||||||||  |||||| |||||||||| | |||||||||||      |||| | |||||||||||||||||||||||||||||    
T  17719489 gagtgaagagttgtatatttataca--gagatgctgcaacggtagctaacggctagttagcatgtgggcctcgtgttttccgacgaaattttcgtaggta 17719392  T
Q  102 atttccaccaatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttccta-ggaaatattcgtcagtaaagtacgcc 200  Q
    || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||   ||||||||||| |||||||| |||    
T  17719391 atgtccaccaatcaaaaccagccacacaccctttatccaacggctttctgcatgtggggccgcagctttcctacaaaaatattcgtcggtaaagtaggcc 17719292  T
Q  201 aatcccaatatcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctg 300  Q
    |        |||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||||||||||    
T  17719291 a--------atcccatgctcccacgcgccctttttctgcatgtggggccgccactttcctaggaaagtattcctcggtaaaggcaaccaatcacaagctg 17719200  T
Q  301 cca----------------------ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcg 378  Q
    |||                      ||||||| | ||||||||| | ||||||||||  ||| ||||| ||||||||| ||||||| | |||||||||||    
T  17719199 ccacaccccgcttttctggtcctttttttactgataggtgcttttcgacgaaaattttatcgataattagtaggaaaccactttctaaaaaatttcgtcg 17719100  T
Q  379 aaaaattttgtaggaaaatccaatatttcttgt 411  Q
     ||||||||||||||||||||||||||||||||    
T  17719099 gaaaattttgtaggaaaatccaatatttcttgt 17719067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 13820652 - 13820367
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||    
T  13820652 gttgtatatttatacacacagatgctgcaacggtaacaaacggctagttagcttgtgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 13820553  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctagg-aaatattcgtcagtaaagtacgccaatcccaat 209  Q
     ||||||||||  |||||||||||||| ||| |||| | |||||||||||||||| |||||||||| |||||||| || |||||||| ||||            
T  13820552 gatcacaaccatacacacaccctttatccaatggctgtgtgcatgtggggccgcagctttcctaggaaaatattcctcggtaaagtaggcca-------- 13820461  T
Q  210 atcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca 303  Q
    ||| |||||||| |||| ||||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||| || ||| |||||||||||||    
T  13820460 atcacatgcttcaacacaccctttttctgaatgtggggccgccgctttcctaggaaattattcctcggtaaagtcacccattcacaagctgcca 13820367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 12512048 - 12512311
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    |||||||||||||| ||| | ||| ||||| | ||||||||||||||||      |||||||||||||||||||||||||||||||||||||||| ||||    
T  12512048 gttgtatatttatatacacaaatgctgcaatgttaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcgtaggtaattttcacc 12512147  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcc-taggaaatattcgtcagtaaagtacgccaatcccaat 209  Q
    |||||||||||  |||||||||||||| |||||| | | |||||||||||||||| |||||| | | |||||||| || |||||||| ||||            
T  12512148 aatcacaaccatacacacaccctttatccaacggatgtgtgcatgtggggccgcagctttcctttgaaaatattcctcggtaaagtaggcca-------- 12512239  T
Q  210 atcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaa 281  Q
    ||| ||| ||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||| ||||||    
T  12512240 atcacattcttccacacaccctttttctgcatgtggggccgcagctttcctaggaaaatattcctcggtaaa 12512311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 12768258 - 12768522
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    ||||||||| |||| ||| | ||| ||||||||||||||||||||||||      |||||||| |||||||| ||||||||||||||||||| |||||||    
T  12768258 gttgtatatatatatacaaaaatgctgcaacggtaacaaacggctagttagcatgtgggtcccatgttttcctacgaaattttcgtaggtaaattccacc 12768357  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttccta-ggaaatattcgtcagtaaagtacgccaatcccaat 209  Q
    |||||||||||  |||||||||||||| |||||||| | |||||||||||||||| |||||||| | |||||||| || |||||||| ||||            
T  12768358 aatcacaaccatgcacacaccctttatccaacggctgtgtgcatgtggggccgcagctttcctacgaaaatattcctcggtaaagtaggcca-------- 12768449  T
Q  210 atcccatgcttccacacgccctttttctgcatgtgggg-ccgccgctttcttaggaaagtattccttggtaaa 281  Q
    ||| ||||| |||||||  ||||||||||||||||||| ||||| ||||| || |||| ||||||| ||||||    
T  12768450 atcacatgcctccacacagcctttttctgcatgtggggaccgccactttcctacgaaattattcctaggtaaa 12768522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 4809642 - 4809919
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    |||||||||||||| ||| | ||| ||||||||||||||||  ||||||      ||||||||||||||||| ||||||||||| |||||||||||||||    
T  4809642 gttgtatatttatatacacaaatgctgcaacggtaacaaacaactagttagcatgtgggtcccgtgttttcctacgaaattttcataggtaatttccacc 4809741  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctaggaaa-tattcgtcagtaaagtacgccaatcccaat 209  Q
    || ||||||||  ||||||||||| || ||| | || |  ||||||||||||||| |||||||| |||| ||||| || ||||||||  |||            
T  4809742 aaacacaaccatacacacacccttcatccaatgactgtgagcatgtggggccgcagctttcctacgaaattattcctcggtaaagtagacca-------- 4809833  T
Q  210 atcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcaca 295  Q
    ||| ||||||||||||| || ||||||||||||||||||||| |||||| ||||||| ||||||| ||||| | ||||||||||||    
T  4809834 atcacatgcttccacacaccatttttctgcatgtggggccgcagctttcctaggaaaatattcctaggtaatgtcagccaatcaca 4809919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 304 - 411
Target Start/End: Complemental strand, 13820335 - 13820228
Alignment:
Q  304 ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaata 403  Q
    ||||||| | || |||||||| |||||||||||||||||||||||||||||||  ||||||  |||||||||||| ||| ||||||||||||||||| ||    
T  13820335 ttttactgatagttgctttccgacgaaaatttcgtcgctaattcgtaggaaaccgctttctaggaaatttcgtcggaaagttttgtaggaaaatccagta 13820236  T
Q  404 tttcttgt 411  Q
    ||||||||    
T  13820235 tttcttgt 13820228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 113 - 281
Target Start/End: Complemental strand, 24859613 - 24859452
Alignment:
Q  113 tcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttccta-ggaaatattcgtcagtaaagtacgccaatcccaatat 211  Q
    |||||||||  |||||||||||||| |||||||| | |||||||||||||||| |||||||| | |||||||| || |||||||| ||||        ||    
T  24859613 tcacaaccatacacacaccctttatccaacggctgtgtgcatgtggggccgcagctttcctacgaaaatattcctcggtaaagtaagcca--------at 24859522  T
Q  212 cccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaa 281  Q
    | ||||||||||||| ||||||||||||||||||| |||  |||||| ||||||| ||||||| ||||||    
T  24859521 cacatgcttccacacaccctttttctgcatgtgggtccggagctttcctaggaaaatattcctaggtaaa 24859452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 244 - 411
Target Start/End: Original strand, 12512330 - 12512499
Alignment:
Q  244 ggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgccattt----tacttacaggtgctttccaacgaaaatttcgtc 339  Q
    ||||||||||||||| ||||||| ||||||| ||||||| |||||| ||||||  | | |||     || | |||| || ||||| ||||||||||||||    
T  12512330 ggggccgccgctttcctaggaaattattcctaggtaaagtcagccattcacaa--tactattcacaatattgacagttggtttccgacgaaaatttcgtc 12512427  T
Q  340 gctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaatatttcttgt 411  Q
    ||||||||||||||||   ||||||  |||||||||||| ||| |||||||||| ||||||  |||||||||    
T  12512428 gctaattcgtaggaaaacgctttctaggaaatttcgtcggaaagttttgtaggataatccaccatttcttgt 12512499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 411
Target Start/End: Complemental strand, 24859439 - 24859220
Alignment:
Q  214 catgcttccacacgccctttttctgcatgtgggg-ccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca--------- 303  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| || |||| ||||||| ||||||| |||||| ||||||||| |||             
T  24859439 catgcttccacacaccctttttctgcatgtgggggccgccgctttcctacgaaattattcctaggtaaagtcagccattcacaagcttccacgtgctcca 24859340  T
Q  304 ------------ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtag 391  Q
                ||||||| | || |||||||| ||||| ||||||||||||||||||||||||   ||||||  |||||||||| | ||| ||||||||    
T  24859339 cttttctgtcctttttactgaaagttgctttccgacgaatatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtaggaaagttttgtag 24859240  T
Q  392 gaaaatccaatatttcttgt 411  Q
    |||||||||  |||||||||    
T  24859239 gaaaatccaccatttcttgt 24859220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 4809918 - 4810008
Alignment:
Q  214 catgcttccacacgccctttttctgcatgtgggg-ccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca 303  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| || |||| ||||||| ||||| | |||||| |||||||||||||    
T  4809918 catgcttccacacaccctttttctgcatgtgggggccgccgctttcctacgaaattattcctaggtaatgtcagccattcacaagctgcca 4810008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 400
Target Start/End: Original strand, 12768657 - 12768753
Alignment:
Q  304 ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatcca 400  Q
    ||||||| | || |||||||| ||||||||||||||| ||||||||||||||   ||||||  |||||||||| | ||| |||||||||||||||||    
T  12768657 ttttactgaaagttgctttccgacgaaaatttcgtcggtaattcgtaggaaaacgctttctaggaaatttcgtaggaaagttttgtaggaaaatcca 12768753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 411
Target Start/End: Original strand, 4810040 - 4810147
Alignment:
Q  304 ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaata 403  Q
    ||||||| |||| || ||||| ||||| ||||||||||||||||||||||||   ||||||  |||||||| | | ||| ||||||||||||||| |  |    
T  4810040 ttttactgacagttgatttccgacgaatatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcataggaaagttttgtaggaaaatcaacaa 4810139  T
Q  404 tttcttgt 411  Q
    ||||||||    
T  4810140 tttcttgt 4810147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 12768535 - 12768602
Alignment:
Q  214 catgcttccacacgccctttttctgcatgt-ggggccgccgctttcttaggaaagtattccttggtaa 280  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||| || |||| | ||||| |||||    
T  12768535 catgcttccacacaccctttttctgcatgtgggggccgcggctttcctacgaaattgttcctaggtaa 12768602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 24859576 - 24859518
Alignment:
Q  237 tgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcaca 295  Q
    ||||||||||||||| |||||| || |||| ||||||| |||||||  |||||||||||    
T  24859576 tgcatgtggggccgcagctttcctacgaaaatattcctcggtaaagtaagccaatcaca 24859518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 8 - 411
Target Start/End: Original strand, 26084199 - 26084615
Alignment:
Q  8 gagtgaagagttgtatatttatacacagagatgttgcaacggtaacaaacggctagtttg------ggtcccgtgttttccgacgaaattttcgtaggta 101  Q
    |||||||||||||||||||||||       ||| ||||||| |||||||||||||||| |      ||||||||||||||||||||||||||||||||||    
T  26084199 gagtgaagagttgtatatttata-------atgctgcaacgataacaaacggctagttagaatgcgggtcccgtgttttccgacgaaattttcgtaggta 26084291  T
Q  102 atttccaccaatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctagg-aaatattcgtcagtaaagtacgcc 200  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| ||| |||    
T  26084292 atttccaccaatcacaaccagccacacaccctatatccaacggctttctgcatgtggggccgcagctttcctaggaaaatattcgtcggtaacgtaggcc 26084391  T
Q  201 aatcccaatatcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctg 300  Q
    |        ||| |||||| |||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  26084392 a--------atcacatgctcccacgcgccctttttctgcatgtggggccgctgctttcctaggaaagtattcctcggtaaaagcagccaatcacaagctg 26084483  T
Q  301 cca---------------------ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcga 379  Q
     ||                     ||||||| ||| ||||||||| |||||||||||||||||||||||||||||||   |||||  ||||||||||||     
T  26084484 gcacgccccacttttctggtccttttttactgacatgtgctttcctacgaaaatttcgtcgctaattcgtaggaaacctttttctaggaaatttcgtcgg 26084583  T
Q  380 aaaattttgtaggaaaatccaatatttcttgt 411  Q
    |||  ||||||||||||| |||||||||||||    
T  26084584 aaatctttgtaggaaaattcaatatttcttgt 26084615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 411
Target Start/End: Original strand, 23859945 - 23860052
Alignment:
Q  304 ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaata 403  Q
    ||||||| | || |||||||| ||||| ||||||||||||||||||||||||   ||||||  |||||||||| | ||| |||||||||||||||||  |    
T  23859945 ttttactgaaagttgctttccgacgaatatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtaggaaagttttgtaggaaaatccacca 23860044  T
Q  404 tttcttgt 411  Q
    ||||||||    
T  23860045 tttcttgt 23860052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 299
Target Start/End: Original strand, 23859833 - 23859919
Alignment:
Q  214 catgcttccacacgccctttttctgcatgt-ggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagct 299  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||| || |||| ||||||| ||||||| ||| || |||||||||    
T  23859833 catgcttccacacaccctttttctgcatgtgggggccgccgctttcctacgaaattattcctaggtaaagtcagacattcacaagct 23859919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 24636940 - 24636883
Alignment:
Q  8 gagtgaagagttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt 65  Q
    ||||||||||||||||||||||||| ||||||  || |||||||||||||||||||||    
T  24636940 gagtgaagagttgtatatttatacatagagattatgtaacggtaacaaacggctagtt 24636883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 4e-79; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 24688813 - 24689097
Alignment:
Q  8 gagtgaagagttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggta 101  Q
    |||||||||||||||||||||||       ||| ||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||    
T  24688813 gagtgaagagttgtatatttata-------atgctgcaacggtaacaaacggctagttagaatgtgggtcccgtgttttccgacgaaattttcgtaggta 24688905  T
Q  102 atttccaccaatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctagg-aaatattcgtcagtaaagtacgcc 200  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| ||| | |    
T  24688906 atttccaccaatcacaaccagccacacaccctatatccaacggctttctgcatgtggggccgcagctttcctaggaaaatattcgtcggtaacgtaggtc 24689005  T
Q  201 aatcccaatatcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctg 300  Q
    |        ||| ||| || |||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  24689006 a--------atcacattctcccacgcgccctttttctgcatgtggggccgctgctttcctaggaaagtattcctcggtaaaagcagccaatcacaagctg 24689097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 7410473 - 7410737
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    ||||||||| |||| ||| | ||| ||||||||||||||||||||||||      |||||||| |||||||| ||||||||||||||||||| |||||||    
T  7410473 gttgtatatatatatacaaaaatgctgcaacggtaacaaacggctagttagcatgtgggtcccatgttttcctacgaaattttcgtaggtaaattccacc 7410572  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttccta-ggaaatattcgtcagtaaagtacgccaatcccaat 209  Q
    |||||||||||  |||||||||||||| |||||||| | |||||||||||||||| |||||||| | |||||||| || |||||||| ||||            
T  7410573 aatcacaaccatgcacacaccctttatccaacggctgtgtgcatgtggggccgcagctttcctacgaaaatattcctcggtaaagtaggcca-------- 7410664  T
Q  210 atcccatgcttccacacgccctttttctgcatgtgggg-ccgccgctttcttaggaaagtattccttggtaaa 281  Q
    ||| ||||| |||||||  ||||||||||||||||||| ||||| ||||| || |||| ||||||| ||||||    
T  7410665 atcacatgcctccacacagcctttttctgcatgtggggaccgccactttcctacgaaattattcctaggtaaa 7410737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 411
Target Start/End: Original strand, 24678530 - 24678637
Alignment:
Q  304 ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttag-aaatttcgtcgaaaaattttgtaggaaaatccaat 402  Q
    ||||||| ||| ||||||||| |||||| |||||| | |||||||||||||||  ||||| ||| |||||||||||||||  ||||||||||||| ||||    
T  24678530 ttttactgacatgtgctttcctacgaaagtttcgtaggtaattcgtaggaaacc-ctttcctaggaaatttcgtcgaaaatctttgtaggaaaattcaat 24678628  T
Q  403 atttcttgt 411  Q
    |||||||||    
T  24678629 atttcttgt 24678637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 400
Target Start/End: Original strand, 7410872 - 7410968
Alignment:
Q  304 ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatcca 400  Q
    ||||||| | || |||||||| ||||||||||||||| ||||||||||||||   ||||||  |||||||||| | ||| |||||||||||||||||    
T  7410872 ttttactgaaagttgctttccgacgaaaatttcgtcggtaattcgtaggaaaacgctttctaggaaatttcgtaggaaagttttgtaggaaaatcca 7410968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 411
Target Start/End: Original strand, 24689122 - 24689229
Alignment:
Q  304 ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttctta-gaaatttcgtcgaaaaattttgtaggaaaatccaat 402  Q
    ||||||| ||| ||||||||| |||||| |||||| | |||||||||||||||  ||||| || |||||||||||| |||  ||||||||||||| ||||    
T  24689122 ttttactgacatgtgctttcctacgaaagtttcgtaggtaattcgtaggaaac-cctttcctaggaaatttcgtcggaaatctttgtaggaaaattcaat 24689220  T
Q  403 atttcttgt 411  Q
    |||||||||    
T  24689221 atttcttgt 24689229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 7410750 - 7410817
Alignment:
Q  214 catgcttccacacgccctttttctgcatgt-ggggccgccgctttcttaggaaagtattccttggtaa 280  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||| || |||| | ||||| |||||    
T  7410750 catgcttccacacaccctttttctgcatgtgggggccgcggctttcctacgaaattgttcctaggtaa 7410817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 23761611 - 23761326
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||      |||||||||||||||||||| ||||||||||||||||||||||||    
T  23761611 gttgtatatttatacacacagatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacaaaattttcgtaggtaatttccacc 23761512  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctagg-aaatattcgtcagtaaagtacgccaatcccaat 209  Q
    |||||||||||  |||||||||||||| |||||| | | |||||||||||||||  |||||||||| |||||||| || |||||||| ||||            
T  23761511 aatcacaaccatacacacaccctttatccaacggttgtgtgcatgtggggccgctgctttcctaggaaaatattcctcggtaaagtaggcca-------- 23761420  T
Q  210 atcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca 303  Q
    ||| |||||||||| || ||||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||| || ||| |||||||||||||    
T  23761419 atcacatgcttccatacaccctttttctgaatgtggggccgccgctttcctaggaaattattcctaggtaaagtcacccattcacaagctgcca 23761326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 23827072 - 23826787
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||      |||||||||||||||||||| ||||||||||||||||||||||||    
T  23827072 gttgtatatttatacacacagatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacaaaattttcgtaggtaatttccacc 23826973  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctagg-aaatattcgtcagtaaagtacgccaatcccaat 209  Q
    |||||||||||  |||||||||||||| |||||| | | |||||||||||||||  |||||||||| |||||||| || |||||||| ||||            
T  23826972 aatcacaaccatacacacaccctttatccaacggttgtgtgcatgtggggccgctgctttcctaggaaaatattcctcggtaaagtaggcca-------- 23826881  T
Q  210 atcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca 303  Q
    ||| |||||||||| || ||||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||| || ||| |||||||||||||    
T  23826880 atcacatgcttccatacaccctttttctgaatgtggggccgccgctttcctaggaaattattcctaggtaaagtcacccattcacaagctgcca 23826787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 411
Target Start/End: Complemental strand, 23761285 - 23761186
Alignment:
Q  312 acaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaatatttcttgt 411  Q
    |||| |||||||| ||||||||||||||||||||||||||||||   ||||||  |||||||||||| ||| ||||||||||||||||| ||||||||||    
T  23761285 acagttgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtcggaaagttttgtaggaaaatccagtatttcttgt 23761186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 411
Target Start/End: Complemental strand, 23826746 - 23826647
Alignment:
Q  312 acaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaatatttcttgt 411  Q
    |||| |||||||| ||||||||||||||||||||||||||||||   ||||||  |||||||||||| ||| ||||||||||||||||| ||||||||||    
T  23826746 acagttgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtcggaaagttttgtaggaaaatccagtatttcttgt 23826647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 23761472 - 23761405
Alignment:
Q  237 tgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgccat 304  Q
    ||||||||||||||| |||||| ||||||| ||||||| |||||||   |||||||||| ||| ||||    
T  23761472 tgcatgtggggccgctgctttcctaggaaaatattcctcggtaaagtaggccaatcacatgcttccat 23761405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 23826933 - 23826866
Alignment:
Q  237 tgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgccat 304  Q
    ||||||||||||||| |||||| ||||||| ||||||| |||||||   |||||||||| ||| ||||    
T  23826933 tgcatgtggggccgctgctttcctaggaaaatattcctcggtaaagtaggccaatcacatgcttccat 23826866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 7164 - 6880
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||| ||||||||||||||||    
T  7164 gttgtatatttatacacacagatgttgcaacggtaacaaacggctagttaacatgtgggtcccgtgttttccgacgaaatttttgtaggtaatttccacc 7065  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctag-gaaatattcgtcagtaaagtacgccaatcccaat 209  Q
    |||||||||||  |||||||||||||| ||| || | | ||||||||||||||||||||||||||  |||||||| || |||||||| ||||            
T  7064 aatcacaaccatacacacaccctttatccaaaggttgtgtgcatgtggggccgcaactttcctagaaaaatattcctcggtaaagtaggcca-------- 6973  T
Q  210 atcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcc 302  Q
    ||| ||||||||||||| | ||||||||| |||||||||||| |||||| ||||||| ||||||| ||||||| || ||| ||||||||||||    
T  6972 atcacatgcttccacacactctttttctgaatgtggggccgctgctttcctaggaaattattcctcggtaaagtcacccattcacaagctgcc 6880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 6847 - 6753
Alignment:
Q  304 ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatc 398  Q
    ||||||| |||| |||||||| |||||| ||||||||||||||||||||||||  |||||   |||||||||||||||| |||||||||||||||    
T  6847 ttttactgacagttgctttccgacgaaattttcgtcgctaattcgtaggaaaccgctttccaggaaatttcgtcgaaaagttttgtaggaaaatc 6753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0624 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold0624
Description:

Target: scaffold0624; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 66 - 411
Target Start/End: Complemental strand, 2593 - 2234
Alignment:
Q  66 tgggtcccgtgttttccgacgaaattttcgtaggtaatttccaccaatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgca 165  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||  |||||||||||||||| ||||||||||    
T  2593 tgggtcctgtgttttccgacgaaattttcgtaggtaatgtccaccaatcacaaccagctacacaccctatacccaacggctttctgcatatggggccgca 2494  T
Q  166 actttcctagg-aaatattcgtcagtaaagtacgccaatcccaatatcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttagga 264  Q
     |||| ||||| ||||||||||| |||| ||| ||||        ||| |||||| |||| ||||||||||||||||||| |||||| |||||| |||||    
T  2493 gcttttctaggaaaatattcgtcggtaacgtaggcca--------atcacatgctcccacgcgccctttttctgcatgtgtggccgctgctttcctagga 2402  T
Q  265 aagtattccttggtaaaggcagccaatcacaagctgcca---------------------ttttacttacaggtgctttccaacgaaaatttcgtcgcta 343  Q
    |||||||||| | |||| |||||||||||||||||||||                     ||||| | ||| ||||||||| ||||||||||||||||||    
T  2401 aagtattcctcgataaaagcagccaatcacaagctgccacgccccacttttctggtccttttttaataacatgtgctttcctacgaaaatttcgtcgcta 2302  T
Q  344 attcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaatatttcttgt 411  Q
    |||||||| ||||   |||||  |||||||||||||||| |||||||||||||| |||||||||||||    
T  2301 attcgtagaaaacctttttctaggaaatttcgtcgaaaatttttgtaggaaaattcaatatttcttgt 2234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 8e-68; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 8 - 411
Target Start/End: Original strand, 38850614 - 38851030
Alignment:
Q  8 gagtgaagagttgtatatttatacacagagatgttgcaacggtaacaaacggctagtttg------ggtcccgtgttttccgacgaaattttcgtaggta 101  Q
    |||||||||||||||||||||||       ||| ||||||||||||||||| |||||| |      |||||||||||||||||| |||||||||||||||    
T  38850614 gagtgaagagttgtatatttata-------atgctgcaacggtaacaaacgactagttagaatgcgggtcccgtgttttccgactaaattttcgtaggta 38850706  T
Q  102 atttccaccaatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctagg-aaatattcgtcagtaaagtacgcc 200  Q
    |||||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| ||| |||    
T  38850707 atttccaccaatcacaaccagccatataccctatatccaacggctttctgcatgtggggccgcagctttcctaggaaaatattcgtcggtaacgtaggcc 38850806  T
Q  201 aatcccaatatcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctg 300  Q
    |        ||| ||| || |||| |||||||||||||||||||||||||| |||||| |||||||||||| || |||||| ||||||||||||||||||    
T  38850807 a--------atcacattctcccacgcgccctttttctgcatgtggggccgctgctttcctaggaaagtatttctcggtaaaagcagccaatcacaagctg 38850898  T
Q  301 cca---------------------ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttctta-gaaatttcgtcg 378  Q
     ||                     ||||| | ||| ||||||||| |||||||||||||||||||||||||||||| |  ||| ||| ||||||||||||    
T  38850899 gcacgctccacttttctggttcttttttattgacatgtgctttcctacgaaaatttcgtcgctaattcgtaggaaa-tctttttttaggaaatttcgtcg 38850997  T
Q  379 aaaaattttgtaggaaaatccaatatttcttgt 411  Q
     |||  ||||||||||||| |||||||||||||    
T  38850998 gaaatctttgtaggaaaattcaatatttcttgt 38851030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 40065011 - 40064748
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    |||||||||||||| ||| | ||| ||||||||||||||||||||||||      |||||||||||||||||||| ||||||||||||||||||||||||    
T  40065011 gttgtatatttatatacacaaatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacaaaattttcgtaggtaatttccacc 40064912  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttccta-ggaaatattcgtcagtaaagtacgccaatcccaat 209  Q
    |||||||||||  ||||||||| |||| |||||||| | |||||||||||||||| |||||||| | |||||||| || |||||||| ||||            
T  40064911 aatcacaaccatacacacaccccttatccaacggctgtgtgcatgtggggccgcagctttcctacgaaaatattcctcggtaaagtaggcca-------- 40064820  T
Q  210 atcccatgcttccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaa 281  Q
    ||| ||||||||||||| |||||||| ||||||||||||||| |||||| ||||||| ||||||| ||||||    
T  40064819 atcacatgcttccacacaccctttttttgcatgtggggccgcagctttcctaggaaaatattcctcggtaaa 40064748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 23741162 - 23740898
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    |||||||||||||| ||| | ||| ||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||| |||||||    
T  23741162 gttgtatatttatatacacaaatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcgtaggtaaattccacc 23741063  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttcctaggaaa-tattcgtcagtaaagtacgccaatcccaat 209  Q
    |||||||||||  |||||||||||||| |||||||| | |||||||||||||||| |||||||| |||| ||||| || |||| ||| ||||            
T  23741062 aatcacaaccatacacacaccctttatccaacggctgtgtgcatgtggggccgcagctttcctacgaaattattcctcggtaatgtaggcca-------- 23740971  T
Q  210 atcccatgcttccacacgccctttttctgcatgt-ggggccgccgctttcttaggaaagtattccttggtaaa 281  Q
    ||| ||||||||||||| |||||||||||||||| ||||||||||||||| || |||| ||||||| ||||||    
T  23740970 atcacatgcttccacacaccctttttctgcatgtgggggccgccgctttcctacgaaattattcctaggtaaa 23740898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 150 - 400
Target Start/End: Complemental strand, 40064792 - 40064549
Alignment:
Q  150 tgcatgtggggccgcaactttcctaggaaa-tattcgtcagtaaagtacgccaatcccaatatcccatgcttccacacgccctttttctgcatgtgggg- 247  Q
    |||||||||||||||| ||||||||||||| ||||| || ||||| || ||||||| ||        ||||||||||| ||||||||||||||||||||     
T  40064792 tgcatgtggggccgcagctttcctaggaaaatattcctcggtaaattaggccaatcaca--------tgcttccacacaccctttttctgcatgtggggg 40064701  T
Q  248 ccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgccattttacttacaggtgctttccaacgaaaatttcgtcgctaattc 347  Q
    ||||||||||| ||||||| ||||||| ||||||| |||||| |||||||||||  ||||||| |||  |||||||| ||||||||||||||||||||||    
T  40064700 ccgccgctttcctaggaaattattcctaggtaaagtcagccattcacaagctgct-ttttactgacatttgctttccgacgaaaatttcgtcgctaattc 40064602  T
Q  348 gtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatcca 400  Q
    ||||||||   ||||||  |||||||||||| ||| |||||||||||||||||    
T  40064601 gtaggaaaacgctttctaggaaatttcgtcggaaacttttgtaggaaaatcca 40064549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 317 - 411
Target Start/End: Complemental strand, 23740750 - 23740656
Alignment:
Q  317 tgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaatatttcttgt 411  Q
    |||||||| ||||||||||||||||||||||||||||||   ||||||  |||||||||| | |||||||||||||||||||||  |||||||||    
T  23740750 tgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtaggaaaattttgtaggaaaatccaccatttcttgt 23740656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 23740885 - 23740795
Alignment:
Q  214 catgcttccacacgccctttttctgcatgtgggg-ccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca 303  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||||| || |||| ||||||| ||||||| |||||| |||||||||||||    
T  23740885 catgcttccacacaccctttttcggcatgtgggggccgccgctttcctacgaaattattcctaggtaaagtcagccattcacaagctgcca 23740795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 411
Target Start/End: Complemental strand, 35336552 - 35336461
Alignment:
Q  320 tttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaatatttcttgt 411  Q
    ||||| ||||| ||||||||||||||||||||||||| |  | ||  |||||||| ||| ||| ||| |||| |||||||||||||||||||    
T  35336552 tttccgacgaatatttcgtcgctaattcgtaggaaacaaactcctaggaaatttcctcggaaagtttagtagaaaaatccaatatttcttgt 35336461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 52480548 - 52480812
Alignment:
Q  17 gttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 110  Q
    |||||||||||||| ||| | ||| |||||||||||||||| |||||||      |||||| |||||||||||||||||||||||||||||| |||||||    
T  52480548 gttgtatatttatatacacaaatgctgcaacggtaacaaactgctagttagcatgtgggtctcgtgttttccgacgaaattttcgtaggtaaattccacc 52480647  T
Q  111 aatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgcaactttccta-ggaaatattcgtcagtaaagtacgccaatcccaat 209  Q
    ||||| |||||  |||||||||||||| |||||||| | ||||||||||| |||| |||||||| | |||||||| || |||||||| ||||            
T  52480648 aatcaaaaccatacacacaccctttatccaacggctgtgtgcatgtggggtcgcagctttcctacgaaaatattcctcggtaaagtaggcca-------- 52480739  T
Q  210 atcccatgcttccacacgccctttttctgcatgt-ggggccgccgctttcttaggaaagtattccttggtaaa 281  Q
    ||| |||| |||||||| |||||||||||||||| |||||||| |||||| ||||||| ||||||| ||||||    
T  52480740 atcacatgattccacacaccctttttctgcatgtgggggccgcagctttcctaggaaattattcctaggtaaa 52480812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 42 - 196
Target Start/End: Original strand, 54956997 - 54957158
Alignment:
Q  42 tgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggtaatttccaccaatcacaaccagccacacacccttt 135  Q
    ||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  54956997 tgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcgtaggtaaattccaccaatcacaaccagacacacacccttt 54957096  T
Q  136 attcaacggctttctgcatgtggggccgcaactttccta-ggaaatattcgtcagtaaagta 196  Q
    || |||||||| | |||||| ||||||||| |||||||| | |||||||| || ||||||||    
T  54957097 atccaacggctgtgtgcatgcggggccgcagctttcctacgaaaatattcctcggtaaagta 54957158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 22326715 - 22326638
Alignment:
Q  226 cgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca 303  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||    
T  22326715 cgccctttttctgcatgtggggccgccgctttcctaggaaagtattcctcggtaaaagcagccaatcacaagctgcca 22326638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 54957224 - 54957319
Alignment:
Q  209 tatcccatgcttccacacgccctttttctgcatgtgggg-ccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca 303  Q
    |||| ||||||||||||| |||||||||||||||||||| ||||||||||  || |||| ||||||| ||||||| |||||| |||||||||||||    
T  54957224 tatcacatgcttccacacaccctttttctgcatgtgggggccgccgcttttctacgaaattattcctaggtaaagtcagccattcacaagctgcca 54957319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 411
Target Start/End: Original strand, 52480946 - 52481053
Alignment:
Q  304 ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatccaata 403  Q
    ||||||| | || |||||||| ||||||||||||||||||||||||||||||   ||||||  |||||||||| | ||| |||| ||||||||||||  |    
T  52480946 ttttactgaaagttgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtaggaaagttttctaggaaaatccacca 52481045  T
Q  404 tttcttgt 411  Q
    ||||||||    
T  52481046 tttcttgt 52481053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 52480825 - 52480914
Alignment:
Q  214 catgcttccacacgccctttttctgcatgtgggg-ccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctgcca 303  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||| || |||| ||||||| ||||||| |||||| | |||||||||||    
T  52480825 catgcttccacacaccctttt-ctgcatgtgggggccgccgctttcctacgaaattattcctaggtaaagtcagccatttacaagctgcca 52480914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 22326906 - 22326805
Alignment:
Q  8 gagtgaagagttgtatatttatacacagagatgttgcaacggtaacaaacggctagtt------tgggtcccgtgttttccgacgaaattttcgtaggta 101  Q
    |||||||||||||||||||||||       ||| ||||||||||||||||||||||||      ||||||||||||||| | | ||||||||||||||||    
T  22326906 gagtgaagagttgtatatttata-------atgctgcaacggtaacaaacggctagttagaatgtgggtcccgtgtttttctaggaaattttcgtaggta 22326814  T
Q  102 atttccacc 110  Q
    || ||||||    
T  22326813 atgtccacc 22326805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 400
Target Start/End: Original strand, 54957351 - 54957447
Alignment:
Q  304 ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatcca 400  Q
    ||||||| | || |||||||| ||||| ||||||||||||||| ||||||||   ||||||   ||||||||| | ||| |||||||||||||||||    
T  54957351 ttttactgaaagttgctttccgacgaatatttcgtcgctaatttgtaggaaaacgctttctagaaaatttcgtaggaaagttttgtaggaaaatcca 54957447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 10 - 89
Alignment:
Q  221 ccacacgccctttttctgcatgtggggccgccgctttcttaggaaagtattccttggtaaaggcagccaatcacaagctg 300  Q
    |||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  10 ccacgcgccctttttctgcatgtggggccgctgctttcctaggaaagtattcctcggtaaaagcagccaatcacaagctg 89  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 411
Target Start/End: Original strand, 114 - 221
Alignment:
Q  304 ttttacttacaggtgctttccaacgaaaatttcgtcgctaattcgtaggaaactactttctta-gaaatttcgtcgaaaaattttgtaggaaaatccaat 402  Q
    ||||||| ||| ||||||||| |||||| |||||| | |||||||||||||||  ||||| || |||||||||||| |||  ||||||||||||| ||||    
T  114 ttttactgacatgtgctttcctacgaaagtttcgtagataattcgtaggaaac-cctttcctaggaaatttcgtcggaaatctttgtaggaaaattcaat 212  T
Q  403 atttcttgt 411  Q
    |||||||||    
T  213 atttcttgt 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1414 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 400
Target Start/End: Original strand, 1 - 80
Alignment:
Q  321 ttccaacgaaaatttcgtcgctaattcgtaggaaactactttcttagaaatttcgtcgaaaaattttgtaggaaaatcca 400  Q
    |||| ||||||||||||||| ||||||||||||||   ||||||  |||||||||| | ||| |||||||||||||||||    
T  1 ttccgacgaaaatttcgtcggtaattcgtaggaaaacgctttctaggaaatttcgtaggaaagttttgtaggaaaatcca 80  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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