View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6016_high_18 (Length: 388)

Name: NF6016_high_18
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6016_high_18
NF6016_high_18
[»] chr1 (1 HSPs)
chr1 (18-383)||(50847256-50847623)
[»] chr5 (2 HSPs)
chr5 (140-172)||(17734030-17734062)
chr5 (139-173)||(17933217-17933251)
[»] chr7 (1 HSPs)
chr7 (143-172)||(1094166-1094195)
[»] chr6 (1 HSPs)
chr6 (139-171)||(2730900-2730932)
[»] chr3 (2 HSPs)
chr3 (245-297)||(36420385-36420437)
chr3 (146-174)||(42064094-42064122)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 50847256 - 50847623
Alignment:
Q  18 gtttgtttaaatttcactatgctttagtactagaacattgcattgctatagcttctatttgattacattatgtactaaatat--cgtcttgtgaagcaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  50847256 gtttgtttaaatttcactatgctttagtactagaacattgcattgctatagcttctatttgattacagtatgtactaaatatatcgtcttgtgaagcaac 50847355  T
Q  116 aacaaattgctgaaattatgctacgctatgctatagccgctatttgacaacactggtttaaatctaatcgtaaagttgaactaatcctcatgtatgcatg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50847356 aacaaattgctgaaattatgctacgctatgctatagccgctatttgacaacaatggtttaaatctaatcgtaaagttgaactaatcctcatgtatgcatg 50847455  T
Q  216 ttgtattactgctcaatcttttcaactccactttactgatttaaatgtgttgtttgtattgtataacatgttcaaatcgattcaaaaattctaacaaatt 315  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  50847456 ttgtatcactgctcaatcttttcaactccgctttactgatttaaatgtgttgtttgtattgtgtaacatgttcaaatcgattaaaaaattctaacaaatt 50847555  T
Q  316 attgattatttacctatatagttgaactgacgtcgccttccttcacgaacatccggtcccattctctg 383  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50847556 attgattatttacctatataattgaactgacgtcgccttccttcacgaacatccggtcccattctctg 50847623  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 17734062 - 17734030
Alignment:
Q  140 gctatgctatagccgctatttgacaacactggt 172  Q
    |||||||||||||||||||||||||||||||||    
T  17734062 gctatgctatagccgctatttgacaacactggt 17734030  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 17933217 - 17933251
Alignment:
Q  139 cgctatgctatagccgctatttgacaacactggtt 173  Q
    |||||||||||||||||||| ||||||||||||||    
T  17933217 cgctatgctatagccgctatatgacaacactggtt 17933251  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 1094166 - 1094195
Alignment:
Q  143 atgctatagccgctatttgacaacactggt 172  Q
    ||||||||||||||||||||||||||||||    
T  1094166 atgctatagccgctatttgacaacactggt 1094195  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 2730900 - 2730932
Alignment:
Q  139 cgctatgctatagccgctatttgacaacactgg 171  Q
    |||||||||||||||| ||||||||||||||||    
T  2730900 cgctatgctatagccgttatttgacaacactgg 2730932  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 36420385 - 36420437
Alignment:
Q  245 actttactgatttaaatgtgttgtttgtattgtataacatgttcaaatcgatt 297  Q
    ||||||||||||||||||| ||||||  |||||||||||| || |||| ||||    
T  36420385 actttactgatttaaatgtattgttttaattgtataacatttttaaatggatt 36420437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 42064122 - 42064094
Alignment:
Q  146 ctatagccgctatttgacaacactggttt 174  Q
    |||||||||||||||||||||||||||||    
T  42064122 ctatagccgctatttgacaacactggttt 42064094  T

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