View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_high_19 (Length: 388)
Name: NF6016_high_19
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 43092222 - 43091866
Alignment:
| Q |
20 |
aactgctctgatttttaaaatggccgatattttatcagttgtgctttcgtgtgtgtgcagtgatgttcaatcttatgaaattatttttaacgatgaatat |
119 |
Q |
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| T |
43092222 |
aactgctatggtttttaaaatggccgatattttgtcagttgtgttttcgtgtgtgtgcagtgatgttcaatcttatgaatttatttttaacgatgaatat |
43092123 |
T |
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| Q |
120 |
gttgctaacaacacagggaaaagtgttacataaatgcatattcttattcctataaatttgttcttgggataatcatttcaccaacttcataacaacaaac |
219 |
Q |
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| T |
43092122 |
gttgctaacaacacagggaaaagtgttacataaatgcatattcttattcctataaatttgttcttgagataatcatttcgccaacttcataacaacaaac |
43092023 |
T |
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| Q |
220 |
attttatctaagcttccctttgtatgtgagatgacaaatatcttctacattaatgcaacttatattttctcttattatggaaaagtaaaattctgcaaac |
319 |
Q |
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| T |
43092022 |
attttacctaagcttccctttgtatgtgagatgacaaatatcttctacattaatgcaacttatattttctcttattatggaaaagtaaaattctgcaaac |
43091923 |
T |
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| Q |
320 |
tttacatgtcttatattatctccagttttatgtaaaagtttgcatgcatatattcat |
376 |
Q |
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| T |
43091922 |
tttacatgtcttatattatctccagttttatgtaaaagtttgcatgcatatattcat |
43091866 |
T |
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