View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_high_2 (Length: 750)
Name: NF6016_high_2
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 635; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 16 - 731
Target Start/End: Original strand, 37084284 - 37084988
Alignment:
| Q |
16 |
atcaaaataaatcagatatataaagcaatccaagcagaacaaactatctatnnnnnnnnnnnnnnnnnnnngtcaacatccttctacatcaacagaattg |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37084284 |
atcaaaataaatcagatatataaagcaatccaagcagaacaaactatctataaaaaaaaa-----------gtcaacatccttctacatcaacagaattg |
37084372 |
T |
|
| Q |
116 |
aattctaaccatcaaccgtaattaaaaaggaaagtcaaccaacttaaacatattgtgaaatcaaaaggtttgcaaaggccttacaatacacttgctttat |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084373 |
aattctaaccatcaaccgtaattaaaaaggaaagtcaaccaacttaaacatattgtgaaatcaaaaggtttgcaaaggccttacaatacacttgctttat |
37084472 |
T |
|
| Q |
216 |
tttcttctacgttttctgccactttcatcagatgaatgggagctccgcaaggtcaaacttttatagtagacgcgtagattcttagtaagctcgccaagtc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084473 |
tttcttctacgttttctgccactttcatcagatgaatgggagctccgcaaggtcaaacttttatagtagacgcgtagattcttagtaagctcgccaagtc |
37084572 |
T |
|
| Q |
316 |
caatcgacgtgaagaagttagtggaaaaccgtgtgtttcttgtgctatctttgggaaatattgattcaaaacagtcctgcattgctggatcattcaaccg |
415 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084573 |
caatcgacgtgaagaagttaatggaaaaccgtgtgtttcttgtgctatctttgggaaatattgattcaaaacagtcctgcattgctggatcattcaaccg |
37084672 |
T |
|
| Q |
416 |
ctcattcagcacatgtatgccaagatgctcagataactcttggaacagaatcttactaaatatccgcgaagcagaagttgtgtcctcttcagtcaaccgg |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084673 |
ctcattcagcacatgtatgccaagatgctcagataactcttggaacagaatcttaataaatatccgcgaagcagaagttgtgtcctcttcagtcaaccgg |
37084772 |
T |
|
| Q |
516 |
atatatgacaacacgttccaagggagagcggatgtggcaagcaaatgagcaaaaaactgtgccacatttcggatttgatttgtttgaagcctgtgaatgg |
615 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
37084773 |
atatatgacaacacgttccaagggagagcggatgtggcaagcaaatgagcaaaaaactgtgccacatttcggagttgatttgtttgaagcctgtgaattg |
37084872 |
T |
|
| Q |
616 |
ttgacaactgttgagcaaaacacttttcaaagttttgttgataaactttgttgatcatacaaaaacgctcccccagaagaccatagtatggacgataaac |
715 |
Q |
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| T |
37084873 |
ttgacaactgttgagcaaaacacttttcaaagttttgttgataaactttgttgatcatacaaaaacgctcccccagaagaccatagtatggacgataaac |
37084972 |
T |
|
| Q |
716 |
tttttcatacctgcag |
731 |
Q |
| |
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|||||||||||||||| |
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| T |
37084973 |
tttttcatacctgcag |
37084988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 88 - 731
Target Start/End: Complemental strand, 37184948 - 37184292
Alignment:
| Q |
88 |
tcaacatccttctacatcaacagaattgaattctaaccatcaaccgtaattaaaaaggaaagtcaaccaacttaaacatattgt--------------ga |
173 |
Q |
| |
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||||||||| ||||||||| |||||| ||||||||| |||||| || || |||||||||||| ||| ||||| |||||||||| | |
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| T |
37184948 |
tcaacatccctctacatcagcagaatccaattctaactatcaacagttatgaaaaaggaaagtaaactaactt-aacatattgtaaaaccattgattcta |
37184850 |
T |
|
| Q |
174 |
aatcaaaaggtttgcaaaggccttacaatacacttgctttattttcttctacgttttctgccactttcatcagatgaatgggagctccgcaaggtcaaac |
273 |
Q |
| |
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||||||||||||||||| ||||||| ||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
37184849 |
aatcaaaaggtttgcaagggccttaaaatgcatttgctttattttcttctacgttttctgccactttcatccaatgaatgggagctccgcaaggtcagat |
37184750 |
T |
|
| Q |
274 |
ttttatagtagacgcgtagattcttagtaagctcgccaagtccaatcgacgtgaagaagttagtggaaaaccgtgtgtttcttgtgctatctttgggaaa |
373 |
Q |
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|||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
37184749 |
ttttcaaatagacgcctagattcttagtaagctcgccaagtccaatcgacgtgaagaagttaatggaaaaccgtgtgttttttgtgctatctttgggaaa |
37184650 |
T |
|
| Q |
374 |
tattgattcaaaacagtcctgcattgctggatcattcaaccgctcattcagcacatgtatgccaagatgctcagataactcttggaacagaatcttacta |
473 |
Q |
| |
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|| |||||||||||| ||||||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| || |
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| T |
37184649 |
taatgattcaaaacaatcctgcattactggatcattcaaccgatcattcagcacctggatgccaagatgctcagataactcttggaacagaatcttaata |
37184550 |
T |
|
| Q |
474 |
aatatccgcgaagcagaagttgtgtcctcttcagtcaaccggatatatgacaacacgttccaagggagagcggatgtggcaagcaaatgagcaaaaaact |
573 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37184549 |
aatatccgcgaagaagaagttgtgtcctcttcagtcaaccggatatatgataacacgttccaagggagagtcgatgtggcaagcaaatgagcaaaaaact |
37184450 |
T |
|
| Q |
574 |
gtgccacatttcggatttgatttgtttgaagcctgtgaatggttgacaactgttgagcaaaacacttttcaaagttttgttgataaactttgttgatcat |
673 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37184449 |
gtgccacatttcggagttgatttgtttgaagcctgtgaattgttgacaactgttgagcaaaacacttttcaaagttttgttgataaactttgttgatcat |
37184350 |
T |
|
| Q |
674 |
acaaaaacgctcccccagaagaccatagtatggacgataaactttttcatacctgcag |
731 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37184349 |
acaaaaacgctcccccagaagaccatagtatggacgataaactttttcatacctgcag |
37184292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 456 - 697
Target Start/End: Complemental strand, 11339642 - 11339401
Alignment:
| Q |
456 |
tggaacagaatcttactaaatatccgcgaagcagaagttgtgtcctcttcagtcaaccggatatatgacaacacgttccaagggagagcggatgtggcaa |
555 |
Q |
| |
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||||| ||||||||| ||||||| ||||||| |||||||||||| || ||||||| || || || || || |||| |||||| ||||| | || ||| |
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| T |
11339642 |
tggaagagaatcttaataaatatacgcgaagaagaagttgtgtcgtcctcagtcaggcgaatgtaagataagacgtgccaaggcagagcaaaagtcccaa |
11339543 |
T |
|
| Q |
556 |
gcaaatgagcaaaaaactgtgccacatttcggatttgatttgtttgaagcctgtgaatggttgacaactgttgagcaaaacacttttcaaagttttgttg |
655 |
Q |
| |
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|||||||||||||||| | ||||| |||| | || |||||||| |||||||| || ||| |||| || | || ||||| ||||| |||| ||| |
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| T |
11339542 |
gcaaatgagcaaaaaatttagccacgtttctcaatttatttgtttcgagcctgtggatcaatgaatactgctgcacgaagcacttctcaaaattttcttg |
11339443 |
T |
|
| Q |
656 |
ataaactttgttgatcatacaaaaacgctcccccagaagacc |
697 |
Q |
| |
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|| ||||||||| ||||| || ||||||| ||| |||||||| |
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| T |
11339442 |
atgaactttgttaatcatgcagaaacgctgcccaagaagacc |
11339401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 631 - 695
Target Start/End: Original strand, 14712516 - 14712580
Alignment:
| Q |
631 |
caaaacacttttcaaagttttgttgataaactttgttgatcatacaaaaacgctcccccagaaga |
695 |
Q |
| |
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|||||||||| ||||| |||| ||||| ||||||||||||||||||||||||| ||| |||||| |
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|
| T |
14712516 |
caaaacacttctcaaaattttcttgatgcactttgttgatcatacaaaaacgctacccaagaaga |
14712580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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