View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_high_21 (Length: 358)
Name: NF6016_high_21
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 36262238 - 36262566
Alignment:
| Q |
20 |
tcgaagggtttagaagaaaaaatatatcaggtttaaattatcaaaatctttttccctagaaatcgaaaggttccaaagaaaaaatatatcaatatgagaa |
119 |
Q |
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| T |
36262238 |
tcgaaggattaagaagaaaaaatatatcagatttaaattatcaaaatctttttccctagaaatcgaaaggttccgaagaaaaaatatatcaatatgagaa |
36262337 |
T |
|
| Q |
120 |
tttgagaaccttactaacctgcatattgttgtatctattgaaggtcttactgcatatggagcaagcaaactgcataggtccaacaagaatctgagcagga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36262338 |
tttgagaaccttactaacctgcatattgttgtatctattgaaggtcttactgcatatggagcaagcaaactgcataggtccaacaagaatctgagcagga |
36262437 |
T |
|
| Q |
220 |
gttggtatccaaaaccttctctcttccttaaaacaaaaaccatgcacgtttttcttcaattcttcttccttaacacaatcaaaaaccttattcttctcat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36262438 |
gttggtatccaaaaccttctctcttccttaaaacaaaaaccatgcacgtttttcttcaattcttcttccttaacacaatcaaaaaccttattcttctcat |
36262537 |
T |
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| Q |
320 |
catgttcatcagattcatgacctcctatg |
348 |
Q |
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| T |
36262538 |
catgttcatcagattcatgaccccctatg |
36262566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 19331269 - 19331164
Alignment:
| Q |
132 |
actaacctgcatattgttgtatctattgaaggtcttactgcatatggagcaagcaaactgcataggtccaacaagaatctgagcaggagttggtatccaa |
231 |
Q |
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|||||||||||| ||||| || ||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
19331269 |
actaacctgcatgttgttatacctattgaaggttttgttgcatatggagcaagcaaattgcataggtccaacaaggatctgtgcaggagttggtatccaa |
19331170 |
T |
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| Q |
232 |
aacctt |
237 |
Q |
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|||||| |
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| T |
19331169 |
aacctt |
19331164 |
T |
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