View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_high_23 (Length: 318)
Name: NF6016_high_23
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 44828211 - 44828499
Alignment:
| Q |
13 |
aaaattacaaaaataaagacacacaatataatcattatcttattatagacaacaatattgtggtgnnnnnnnnggcaaaatattgatannnnnnncttgt |
112 |
Q |
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| T |
44828211 |
aaaattacaaaaataaagacacacaatataatcattatcttattatagacaacaatattgtggtgaaaaaaaaggcaaaatattgatatttttttcttgt |
44828310 |
T |
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| Q |
113 |
atttaccatgcaacgacgacagtaaaagttgtcaaaagtatctaaagagacactcaagcttttgttcaaaaatgtatcagtctgagattcactttctcta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828311 |
atttaccatgcaacgacgacagtaaaagttgtcaaaagtatctaaagagacactcaagcttttgttcaaaaatgtatcagtctgagattcactttctcta |
44828410 |
T |
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| Q |
213 |
cgatcttcatcattttggtccttttccttgatatttttatatcgctcctgcatattttgattgagaacatttgtccatgacataaaatt |
301 |
Q |
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| T |
44828411 |
cgatcttcatcattttggtccttttccttgatatttttatatcgctcctgcatattttgattgagaacatttgtccatgacataaaatt |
44828499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 8370640 - 8370763
Alignment:
| Q |
163 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
262 |
Q |
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|||| ||||||||||||||| || | ||||| |||| | || |||||| | ||||||| || ||||||||||||||||||||||| ||| ||||||| |
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| T |
8370640 |
cacttaagcttttgttcaaatatatctcagtttgaggtccattttctccaaaatcttcagaatgttggtccttttccttgatattttgataatgctcctg |
8370739 |
T |
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| Q |
263 |
catattttgattgagaacatttgt |
286 |
Q |
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| T |
8370740 |
catattttgattgaaaatatttgt |
8370763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 8372042 - 8372165
Alignment:
| Q |
163 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
262 |
Q |
| |
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|||||||||||||||||||| || | ||||| |||||| || |||||| | ||||||| || ||| || |||||| | |||||| ||| |||||||| |
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| T |
8372042 |
cactcaagcttttgttcaaacatatctcagtttgagatccattttctccaaaatcttcagaatgttgatctttttccctaatatttcgataacgctcctg |
8372141 |
T |
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| Q |
263 |
catattttgattgagaacatttgt |
286 |
Q |
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|||||||||||||| || |||||| |
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| T |
8372142 |
catattttgattgaaaatatttgt |
8372165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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