View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6016_high_3 (Length: 695)
Name: NF6016_high_3
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_high_3 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 203 - 695
Target Start/End: Original strand, 6169654 - 6170141
Alignment:
| Q |
203 |
cgtagttgattgtttttataaatagagagttcaagccctatagaataaaattggagatgcatgcgtaagaaaacaaaagtttgtattnnnnnnnnnnnng |
302 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
6169654 |
cgtatttgattgtttttataaatagagagttcaagccctatagaataaaattggagatgcatgcgtaagaatacaaaagtttgtattaaaaaaaaat--g |
6169751 |
T |
|
| Q |
303 |
gactttgttttttgaggataaacatagaaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctgctgctattattatttacaaac |
402 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6169752 |
gaatttgttttttgaggataaacatagaaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctgctgctattattatttacaaac |
6169851 |
T |
|
| Q |
403 |
ataggattttctgcaatgtcaatagcctcatttgtcccgttggtgttttcaaatcgaccaacgtaacgtgtacactttcatccattcgtcgacaactttt |
502 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6169852 |
ataggattttctgcaatgtcaatagcttcatttgtcccgttggtgttttcaaatcgaccaatgtaacgtgtacactttcatgcattcgtcgacaactttt |
6169951 |
T |
|
| Q |
503 |
gttccaaaaaaggatgagggtttctactactaatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaa |
602 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6169952 |
gttccaaaaaaggatgagggttt---ctactaatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaa |
6170048 |
T |
|
| Q |
603 |
taattcatttatcaatacttgatcaccaatattcnnnnnnncaacatcaccaacaacaatctcaaagaacgatatcttttggcggttaccact |
695 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
6170049 |
taatccatttatcaatacttgatcaccaatattcaaaaaaacaacatcaccaacaacaatctcaaagatcgatatcttttggcagttaccact |
6170141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 6168461 - 6168649
Alignment:
| Q |
18 |
tgatggtgtttggttgattttaatgaaaatttaaatcattaaaaaagaaaggataatgaaattttgaatgagaattccaaattgggaagacgtaaatgaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6168461 |
tgatggtgtttggttgattttaatgaaaatttaaatcattaaaaaagaaaggataatgaaattttgaatgagaattctaaattgggaagacgtaaatgaa |
6168560 |
T |
|
| Q |
118 |
tgcctagaacatttcaaggttatgactatgtgtggattaaatatttctcacataaattgtttttccgacctaaaccgtttgtgatcgta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6168561 |
tgcctagaacatttcaaggttatgactatgtatggattaaatatttctcacataaattgtttttccgacctaaaccgtttgtaatcgta |
6168649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 535 - 668
Target Start/End: Original strand, 6186927 - 6187060
Alignment:
| Q |
535 |
atctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataattcatttatcaatacttgatcaccaatat |
634 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| |||||||||||||||| |||| |||||| | ||| ||| ||| | ||||||||||||||| | |
|
|
| T |
6186927 |
atctctacatgatcactctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatct |
6187026 |
T |
|
| Q |
635 |
tcnnnnnnncaacatcaccaacaacaatctcaaa |
668 |
Q |
| |
|
|| ||||||||||||||||||| ||||| |
|
|
| T |
6187027 |
tcaaacaaacaacatcaccaacaacaatatcaaa |
6187060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 533 - 596
Target Start/End: Original strand, 4243869 - 4243932
Alignment:
| Q |
533 |
taatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatc |
596 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||| |||||||||||||||| |||| |||||| |
|
|
| T |
4243869 |
taatctctacatgatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatc |
4243932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University