View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_high_34 (Length: 265)
Name: NF6016_high_34
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 9385331 - 9385571
Alignment:
| Q |
10 |
caatgaatctgatatgagttttccatcttggtaacgtagaagagattgttgagtttgtggagagttgaagagttcttccatacaattgtaaatctctgca |
109 |
Q |
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| T |
9385331 |
caatgaatctgatatgagttttccatcttggtaacgtagaagagattgttgagtttgtggagagttgaagagttcttccatacaattgtaaatctctgca |
9385430 |
T |
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| Q |
110 |
agccctactaagtcactctgaattttctctgcttccaaatgaatgttgcttgagagagagttttgatgatgatgttttaggtggtttaaaagttcttcaa |
209 |
Q |
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| T |
9385431 |
agccctactaagtcactctgaattttctctgcttccaaatgaatgttgcttgagagagagttttgatgatgatgttttaggtggtttaaaagttcttcaa |
9385530 |
T |
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| Q |
210 |
ttctttgagaagaagggtttcctcttgtaggaaaactaatg |
250 |
Q |
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| T |
9385531 |
ttctttgagaagaagggtttcctcttgtaggaaaactaatg |
9385571 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 31455077 - 31454992
Alignment:
| Q |
55 |
ttgttgagtttgtggagagttgaagagttcttccatacaattgtaaatctctgcaagccctactaagtcactctgaattttctctg |
140 |
Q |
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| T |
31455077 |
ttgttgtgtttgttgagattggaagagttcttccatgcaattgtataactcagcaagcacaaccaaatcactttgaattgtctctg |
31454992 |
T |
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