View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_high_38 (Length: 249)
Name: NF6016_high_38
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 27267902 - 27268133
Alignment:
| Q |
16 |
gcaactgcagttacataatattataagttgtatttgactaaaattttctataataacaatgactgctacatgagcgtgatttaaaaccttggctaaaatt |
115 |
Q |
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| T |
27267902 |
gcaactgcagttacataatattataagttgtatttgactaaaattttctataataacaatgactgctacatgagcgtgatttaaaaccttggctaaaatt |
27268001 |
T |
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| Q |
116 |
tgttcatttgatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgcttgatggagaacatagtattgacagaacttttgaagta |
215 |
Q |
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| T |
27268002 |
tgttcatttgatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgcttgatggagaacatagtattgacagaacttttgaagta |
27268101 |
T |
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| Q |
216 |
gcacaaaaggtttgggctgaggttttcttcta |
247 |
Q |
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| T |
27268102 |
gcacaaaaggtttgggctgaggttttcttcta |
27268133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 81 - 247
Target Start/End: Original strand, 27251181 - 27251347
Alignment:
| Q |
81 |
ctacatgagcgtgatttaaaaccttggctaaaatttgttcatttgatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgcttg |
180 |
Q |
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| T |
27251181 |
ctacatgagtgtgatttaaaaccttggctaaaatatgtccatttaatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgctgg |
27251280 |
T |
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| Q |
181 |
atggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttcta |
247 |
Q |
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| T |
27251281 |
atggagaacatggtattgatagaacttatgaagtagcacaaaaggtttgggctgaggttttcttcta |
27251347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 81 - 247
Target Start/End: Original strand, 21195432 - 21195598
Alignment:
| Q |
81 |
ctacatgagcgtgatttaaaaccttggctaaaatttgttcatttgatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgcttg |
180 |
Q |
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|||||||| || ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21195432 |
ctacatgaatgtaatttaaaaccttggctaaaatatgtccatttaatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgctgg |
21195531 |
T |
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| Q |
181 |
atggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttcta |
247 |
Q |
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| T |
21195532 |
atggagaacatggtattgacagaacttatgaagtagcacaaaaggtttgggctgaggttttcttcta |
21195598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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