View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6016_high_4 (Length: 671)

Name: NF6016_high_4
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6016_high_4
NF6016_high_4
[»] chr5 (7 HSPs)
chr5 (3-656)||(11186851-11187511)
chr5 (559-608)||(39143008-39143057)
chr5 (529-608)||(8266071-8266152)
chr5 (559-609)||(39147399-39147449)
chr5 (529-586)||(15251478-15251535)
chr5 (574-655)||(22934824-22934905)
chr5 (562-606)||(36529161-36529205)
[»] chr3 (2 HSPs)
chr3 (565-656)||(21652786-21652877)
chr3 (558-638)||(45030051-45030131)
[»] chr4 (1 HSPs)
chr4 (558-607)||(50174519-50174568)
[»] chr8 (2 HSPs)
chr8 (558-609)||(12511127-12511178)
chr8 (568-636)||(11094256-11094324)
[»] chr2 (1 HSPs)
chr2 (558-609)||(42141840-42141891)
[»] chr7 (2 HSPs)
chr7 (573-655)||(46243919-46244001)
chr7 (559-607)||(20250320-20250368)
[»] chr1 (4 HSPs)
chr1 (565-642)||(3533408-3533485)
chr1 (529-601)||(3875766-3875839)
chr1 (529-607)||(29086527-29086607)
chr1 (529-607)||(35739843-35739923)


Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 3 - 656
Target Start/End: Original strand, 11186851 - 11187511
Alignment:
Q  3 cgcacattaggggagttggatgaacaatcacctttgaagatacccatacttttaaatagaagttaaggttgtaaaaatgaatgaaaatcagatcaacctg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11186851 cgcacattaggggagttggatgaacaatcacctttgaagatacccatacttttaaatagaagttaaggttgtaaaaatgaatgaaaatcagatcaacctg 11186950  T
Q  103 agatcaaaccttatgataattcacgagtaacactcttctatgaaaattcaatcgatttaggacttgtttaaattggtcnnnnnnnnagtttatctagtat 202  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  11186951 agattaaaccttatgataattcacgagtaacactcttctataaaaattcaatcgatttaggacttgtttaaattggtcttgtttttagtttatctagtat 11187050  T
Q  203 aagtacttgtgagatgatttgtgagagtgtttgaaaacaacttatgccatatccctaaattgttttgagcttatataaaaacactttaacattgtcttta 302  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11187051 aagtacttgtgagatcatttgtgagagtgtttgaaaacaacttatgccatatccctaaattgttttgaacttatataaaaacactttaacattgtcttta 11187150  T
Q  303 ttttgttatagaaatagc--------aatgtnnnnnnnncttttacatataagcacttataacatattcactttttattttgaatggcaaagatgaatat 394  Q
    |||||||| |||||||||        | |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11187151 ttttgttacagaaatagcttatatatagtgt-aaaaaaacttttacatataagcacttataacatattcactttttattttgaatggcaaagatgaatat 11187249  T
Q  395 atcaatccatctatctatacccctcacatacacacttatactatattataaagtaaacttgagtttttcttgaactagcattatgatgatgtgacatctc 494  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11187250 atcaatccatctatctatacccctcacatacaaacttatactatattgtaaagtaaacttgagtttttcttgaactagcattatgatgatgtgacatctt 11187349  T
Q  495 tnnnnnnncctcacacatttttattttaaatcattcttctttcaattcttttgatctctttattatatcgttaatgaaggataattttgtaagatcactt 594  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11187350 taaaaaaacctcacacatttttattttaaatcattcttctttcaattcttttgatctctttattatatcgttaatgaaggataattttgtaagatcactt 11187449  T
Q  595 gtaatttctcttttcaagactaaataaaatacatttcttaatatgtatataaatgtcaaaat 656  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11187450 gtaatttctcttttcaatactaaataaaatacatttcttaatatgtatataaatgtcaaaat 11187511  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 608
Target Start/End: Original strand, 39143008 - 39143057
Alignment:
Q  559 atatcgttaatgaaggataattttgtaagatcacttgtaatttctctttt 608  Q
    ||||||||||||||||||||||||| || || |||| |||||||||||||    
T  39143008 atatcgttaatgaaggataattttgcaaaatgacttctaatttctctttt 39143057  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 608
Target Start/End: Complemental strand, 8266152 - 8266071
Alignment:
Q  529 tcttctttcaattcttttga--tctctttattatatcgttaatgaaggataattttgtaagatcacttgtaatttctctttt 608  Q
    |||||||||||||||||| |  |||||||   ||||| |||||||| ||||||||| ||| |||||| ||||||||| ||||    
T  8266152 tcttctttcaattcttttaatttctcttttcaatatcattaatgaaagataattttttaaaatcactcgtaatttctttttt 8266071  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 559 - 609
Target Start/End: Original strand, 39147399 - 39147449
Alignment:
Q  559 atatcgttaatgaaggataattttgtaagatcacttgtaatttctcttttc 609  Q
    |||||||||||||||||||||||||||| || | |  ||||||||||||||    
T  39147399 atatcgttaatgaaggataattttgtaaaatgaatcataatttctcttttc 39147449  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 586
Target Start/End: Original strand, 15251478 - 15251535
Alignment:
Q  529 tcttctttcaattcttttgatctctttattatatcgttaatgaaggataattttgtaa 586  Q
    |||||||||||||||||   | ||||| | ||| ||||||||||||||||||||||||    
T  15251478 tcttctttcaattctttatttatctttctcataccgttaatgaaggataattttgtaa 15251535  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 655
Target Start/End: Original strand, 22934824 - 22934905
Alignment:
Q  574 gataattttgtaagatcacttgtaatttctcttttcaagactaaataaaatacatttcttaatatgtatataaatgtcaaaa 655  Q
    ||||||||||||| ||||||| ||  |||||||| ||| || || |||| ||||||| ||||||||| |  |||||||||||    
T  22934824 gataattttgtaaaatcacttatagattctctttccaatacaaagtaaattacattttttaatatgtgtgaaaatgtcaaaa 22934905  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 562 - 606
Target Start/End: Complemental strand, 36529205 - 36529161
Alignment:
Q  562 tcgttaatgaaggataattttgtaagatcacttgtaatttctctt 606  Q
    ||||||||||||||||||||||||| |||| |  |||||||||||    
T  36529205 tcgttaatgaaggataattttgtaaaatcattcataatttctctt 36529161  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 565 - 656
Target Start/End: Complemental strand, 21652877 - 21652786
Alignment:
Q  565 ttaatgaaggataattttgtaagatcacttgtaatttctcttttcaagactaaataaaatacatttcttaatatgtatataaatgtcaaaat 656  Q
    ||||| |||||||||||||||| |||| |  |||||||||||||||| || |||| || ||||||| |||| |||| ||  |||||||||||    
T  21652877 ttaataaaggataattttgtaaaatcattcataatttctcttttcaaaacaaaattaactacattttttaacatgtgtaataatgtcaaaat 21652786  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 638
Target Start/End: Complemental strand, 45030131 - 45030051
Alignment:
Q  558 tatatcgttaatgaaggataattttgtaagatcacttgtaatttctcttttcaagactaaataaaatacatttcttaatat 638  Q
    |||||| ||||| || |||||| |||||| |||||||| ||||||||||||||| |  |||| || || ||||||||||||    
T  45030131 tatatcattaataaatgataatcttgtaaaatcacttgcaatttctcttttcaaaataaaattaactaaatttcttaatat 45030051  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 50174519 - 50174568
Alignment:
Q  558 tatatcgttaatgaaggataattttgtaagatcacttgtaatttctcttt 607  Q
    |||| |||||||||||||||||||||||| || |||| ||||||||||||    
T  50174519 tataccgttaatgaaggataattttgtaaaatgacttataatttctcttt 50174568  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 609
Target Start/End: Complemental strand, 12511178 - 12511127
Alignment:
Q  558 tatatcgttaatgaaggataattttgtaagatcacttgtaatttctcttttc 609  Q
    |||||| |||||||||||||||||||||| || |||| |||| |||||||||    
T  12511178 tatatcattaatgaaggataattttgtaaaatgacttataatatctcttttc 12511127  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 636
Target Start/End: Original strand, 11094256 - 11094324
Alignment:
Q  568 atgaaggataattttgtaagatcacttgtaatttctcttttcaagactaaataaaatacatttcttaat 636  Q
    ||||||| ||||||||||| || |||  |||||||||||||||| || |||| || ||||||| |||||    
T  11094256 atgaaggttaattttgtaaaataactaataatttctcttttcaatacaaaattaattacattttttaat 11094324  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 609
Target Start/End: Complemental strand, 42141891 - 42141840
Alignment:
Q  558 tatatcgttaatgaaggataattttgtaagatcacttgtaatttctcttttc 609  Q
    |||| |||||||||||||||||||||||| || |||| |||||| |||||||    
T  42141891 tataccgttaatgaaggataattttgtaaaatgacttataatttatcttttc 42141840  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 655
Target Start/End: Original strand, 46243919 - 46244001
Alignment:
Q  573 ggataattttgtaagatcacttgtaatttctcttttcaagactaaataaaatacatttcttaatatgtatataaatgtcaaaa 655  Q
    ||||||| |||||| || |||  |||||||| ||||||| || |||| |  |||||||||||||||||||  |||||||||||    
T  46243919 ggataatcttgtaaaattactcataatttcttttttcaatacaaaattatttacatttcttaatatgtatgaaaatgtcaaaa 46244001  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 20250320 - 20250368
Alignment:
Q  559 atatcgttaatgaaggataattttgtaagatcacttgtaatttctcttt 607  Q
    ||||| |||||||||||||||||||||| || ||||  |||||||||||    
T  20250320 atatcattaatgaaggataattttgtaaaattacttagaatttctcttt 20250368  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 642
Target Start/End: Original strand, 3533408 - 3533485
Alignment:
Q  565 ttaatgaaggataattttgtaagatcacttgtaatttctcttttcaagactaaataaaatacatttcttaatatgtat 642  Q
    |||||||||| ||||||||||| || |||| |||||||| ||||| | || | || || ||||||||||||| |||||    
T  3533408 ttaatgaagggtaattttgtaaaattacttataatttcttttttccatacaatattaattacatttcttaatttgtat 3533485  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 601
Target Start/End: Original strand, 3875766 - 3875839
Alignment:
Q  529 tcttctttcaattcttttgatc-tctttattatatcgttaatgaaggataattttgtaagatcacttgtaattt 601  Q
    ||||||||||||||||||  |  ||||| | ||||| |||||||||||||||||||||| || |||| ||||||    
T  3875766 tcttctttcaattcttttatttatctttctcatatcattaatgaaggataattttgtaaaattacttataattt 3875839  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 607
Target Start/End: Complemental strand, 29086607 - 29086527
Alignment:
Q  529 tcttctttcaattcttttgat--ctctttattatatcgttaatgaaggataattttgtaagatcacttgtaatttctcttt 607  Q
    |||||||||||||||||| ||  ||||||   || || |||||||||||||||||||||| ||||||| | || |||||||    
T  29086607 tcttctttcaattcttttaatttctctttccaatttcattaatgaaggataattttgtaaaatcacttatgatatctcttt 29086527  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 607
Target Start/End: Complemental strand, 35739923 - 35739843
Alignment:
Q  529 tcttctttcaattcttttgatctctttatt--atatcgttaatgaaggataattttgtaagatcacttgtaatttctcttt 607  Q
    ||||||||| |||||||| |||||||| ||  || || ||||| |||||||||||||||| |||| |  ||||||||||||    
T  35739923 tcttctttccattcttttaatctcttttttccatgtcattaataaaggataattttgtaaaatcaatcataatttctcttt 35739843  T

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