View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_high_5 (Length: 635)
Name: NF6016_high_5
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 122 - 342
Target Start/End: Complemental strand, 31979605 - 31979386
Alignment:
| Q |
122 |
cattatccttttctgttatgtttgttttatgggtctttattaattttaggttttggggtataattagtggttagtactatgagaaacttgttggaaatag |
221 |
Q |
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| T |
31979605 |
cattatccttttctgttatgtttgttttatgggtctttattaattttaggttttggggtataattagtggttagtactatgagaaacttgttggaaatag |
31979506 |
T |
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| Q |
222 |
atagggttt--tttctctctcttttctgttatggattatgatgaaaggaatcttattagggtttaattttgttctttaagtgttgaactgttcggttcaa |
319 |
Q |
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| T |
31979505 |
agagggttttctctctctctcttttctgttatggattatgatgaaaggaatc---ttagggtttaattttgttctttaagtgttgaactgttcggttcaa |
31979409 |
T |
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| Q |
320 |
atcttatgctgtatgttaccaga |
342 |
Q |
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| T |
31979408 |
atcttatgctgtatgttaccaga |
31979386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 418 - 635
Target Start/End: Complemental strand, 31979311 - 31979085
Alignment:
| Q |
418 |
acttccaccacgttaagttagttatgttaactgatgcatttaaacacaagaatttttatctctagtattcattatgaaaaactttgttggtaatggtaaa |
517 |
Q |
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| T |
31979311 |
acttccaccacgttaagttagttatgttaactgatgcatttaaacacaagaatttttatctctagtattcattatgagaaactttgttggtaatggtaaa |
31979212 |
T |
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| Q |
518 |
atggtaaataactttttgtgtgaccattttgttggtagttaaaagaaattttgcatttattacatg---------tgatttggaatcgtactatagtgtc |
608 |
Q |
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| T |
31979211 |
gaggtaaataactttttgtgtgaccattttgttggtagttaaaagaaattttgcatttactacatgtactccatttgatttggaatcgtactatagtgtc |
31979112 |
T |
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| Q |
609 |
tgtcaattattctcatttcacatgaac |
635 |
Q |
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| T |
31979111 |
tgtcaattattctcatttcacatgaac |
31979085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31979733 - 31979672
Alignment:
| Q |
1 |
cctcagtttgttgatgcttctgaccatgtcaatcttgatctcactcttcacctttgaaaaag |
62 |
Q |
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| T |
31979733 |
cctcagtttgttgatgcttctgaccatgtcaatcttgatctcactcttcacctttgaaaaag |
31979672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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