View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_high_8 (Length: 513)
Name: NF6016_high_8
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 9 - 513
Target Start/End: Complemental strand, 4625446 - 4624942
Alignment:
| Q |
9 |
gagtagcaaagggatagagacttattccatcaattttctttatacctattattattaatcatcaatcccctatttatgcacaatccaaaacccttgatct |
108 |
Q |
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| T |
4625446 |
gagtatcaaagggatagagacttattccatcaattttctttatacctattattattgatcatcaatcccctatttatgcgcaatccaaaacccttgatct |
4625347 |
T |
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| Q |
109 |
taagattatgagtcaaatgtccatttacctcaaccaattatgttatgttatgtcaaatataattccttatatgtcattttgaataataacattactcccc |
208 |
Q |
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| T |
4625346 |
taagattatgagtcaaatgtccatttacctcaaccaattatgttatgttatgtcaaatataattccttatatgtcattttgaataataacattactcccc |
4625247 |
T |
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| Q |
209 |
cattaaaatcaacctcgtcctaaggttgaagtcaaggtaatggtgtaaactgatagcagcaacattccacataactctcatagtcaagtgggccttccac |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4625246 |
cattaaaatcaacctcgtcctaaggttgaagtcaaggtaatggtgtaaactgatagcagcaactttccacataactctcatagtcaagtgggccttccac |
4625147 |
T |
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| Q |
309 |
ataaacaagagaagattcaccacctagatcccactctttgaattcaacctgttggaaaattggaagctcacaaataaaaggattggattcttactgttaa |
408 |
Q |
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| T |
4625146 |
ataaacaagagaagattcaccacctagatcccactctttgaattcaacttgttggaaaattggaagctcacaaataaaaggattggattcttactgttaa |
4625047 |
T |
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| Q |
409 |
aatgagtaaagagcaactttccacaacagaaacattcacacgagttattgataatatacattttccatgtagaaatccaacaatatggttcttttgagat |
508 |
Q |
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| T |
4625046 |
aatgaataaagagcaactttccacaacagaaacattcacacgagttattgataatatacattttccatgtagaaatccaacaatatggttcttttgagat |
4624947 |
T |
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| Q |
509 |
gactt |
513 |
Q |
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| T |
4624946 |
gactt |
4624942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 32848035 - 32848152
Alignment:
| Q |
36 |
catcaattttctttatacctattattattaatcatcaatcccctatttatgcacaatccaaaac-ccttgatcttaagattatgagtcaaatgtccattt |
134 |
Q |
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| T |
32848035 |
catcaattttcttgatacccattattg---atcatcatttctctatttatgcacaatccaaacttccttgattttaggatcatgagccacatgttcattt |
32848131 |
T |
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| Q |
135 |
acctcaaccaattatgttatg |
155 |
Q |
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| T |
32848132 |
acctcaaccaatgatgttatg |
32848152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 15027066 - 15027160
Alignment:
| Q |
130 |
catttacctcaaccaattatgttatgttatgtcaaatataattccttatatgtcattttgaataataacattactcccccattaaaatcaacctcgtcct |
229 |
Q |
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| T |
15027066 |
catttacctcaaccaattatgttatgc-----caaatgtattttctcatgtgttattttggatcataacattactcccccattcaaatcaaccttgtcct |
15027160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 34272400 - 34272283
Alignment:
| Q |
36 |
catcaattttctttatacctattattattaatcatcaatcccctatttatgcacaatccaaa-acccttgatcttaagattatgagtcaaatgtccattt |
134 |
Q |
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| T |
34272400 |
catcaattttcttcatacccattattatttatcatttttc---tatttatgcacaatctaagcatccttgattttaggatcactagtcacatgtccattt |
34272304 |
T |
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| Q |
135 |
acctcaaccaattatgttatg |
155 |
Q |
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| T |
34272303 |
acctaaaccaattatgttatg |
34272283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 39773239 - 39773169
Alignment:
| Q |
125 |
atgtccatttacctcaaccaattatgttatgttatgtcaaatataattccttatatgtcattttgaataataacat |
200 |
Q |
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|||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |
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| T |
39773239 |
atgtccatttttctcaaccaattatgttatgccatgtg-----taattccttatatgtcattttgaatcataacat |
39773169 |
T |
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