View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6016_low_13 (Length: 474)
Name: NF6016_low_13
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 31543680 - 31543223
Alignment:
| Q |
1 |
gaagcaacaaatctcatagcttcattaccatcagatatgttcaaatggtttccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31543680 |
gaagcaacaaatctcatagcttcattaccatcagatatgttcaaatggtttccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactc |
31543581 |
T |
|
| Q |
101 |
ttcccccttctcttggggaatcttcaataaggtatttgcgactcaataaccaaggggcgtttagtgggtttatcggtacaattgatgttatatcatccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
31543580 |
ttcccccttctcttggggaatcttcaataaggtatttgcgactcaataaccaaggggcgtttagtgggtttaccggtacaattgatgttatatcatctat |
31543481 |
T |
|
| Q |
201 |
gagattcttgtctcaggcgtggcttaacaacaacgtgttcgcaggtccaattcctaacatgtctagttccactaatttgtttgatcttcagcttcattcc |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31543480 |
gaggttcttgtctcaggcgtggcttaacaacaacatgttcgcaggtccaattcctaacatgtctagttccactaatttgtttgatcttcagcttcattcc |
31543381 |
T |
|
| Q |
301 |
aatcaattagttggtttggttccacattctctatgcactctctctagcttgaagaacatctctttggacaacaattttcttcaaggaccgatacctgtgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31543380 |
aatcaattagttggtttggttccacattcgctatgcactctctctagcttgaagaacatctctttggacatcaattttcttcaaggaccgatacctgtgt |
31543281 |
T |
|
| Q |
401 |
ttcacgagggtgttaatgcaagttgggaaggaaataacttttgtcgaaatgatgttgg |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31543280 |
ttcacgagggtgttaatgcaagttgggaaggaaataagttttgtcgaaatgatgttgg |
31543223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 31550966 - 31551412
Alignment:
| Q |
1 |
gaagcaacaaatctcatagcttcattaccatcagatatgttcaaatggtttccgcgtttgcatactgtttttctttctcacaacaacttaagtggaactc |
100 |
Q |
| |
|
||||| |||||| || ||| | |||| |||||||| ||||| | |||||||| | ||||||||||||| ||| |||||||||||| | ||||||| | |
|
|
| T |
31550966 |
gaagctacaaatatcttaggtccattgccatcagacgtgttcgattggtttccaagattgcatactgtttctctctctcacaacaacatccgtggaacac |
31551065 |
T |
|
| Q |
101 |
ttcccccttctcttggggaatcttcaataaggtatttgcgactcaataa-ccaaggggcgtttagtgggtttatcggtacaattgatgttatatcatcca |
199 |
Q |
| |
|
|||||| |||||||| ||||| | |||||||||| |||||||| || ||||| || | |||||||| ||||||||||| || ||||| || | |
|
|
| T |
31551066 |
ttcccctgtctcttggaaaatctgtagtaaggtatttacgactcaacaaaccaagacagattgaatgggtttacgggtacaattgaagtgatatcgtcta |
31551165 |
T |
|
| Q |
200 |
tgagattcttgtctcaggcgtggcttaacaacaacgtgttcgcaggtccaattcctaacatgtctagttccactaatttgtttgatcttcagcttcattc |
299 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| |||| | ||| |||||||||||||||| | ||||||| ||||||||||||| || ||||| || |
|
|
| T |
31551166 |
tgagatttttgtctcaagcgtggcttaacaacaacgcgttcactggtacaattcctaacatgtcaaattccactcatttgtttgatctccaacttcactc |
31551265 |
T |
|
| Q |
300 |
caatcaattagttggtttggttccacattctctatgcactctctctagcttgaagaacatctctttggacaacaattttcttcaaggaccgatacctgtg |
399 |
Q |
| |
|
||| ||| | |||||||||||| ||| | | | ||||| ||||||||| ||||||||||||||||||||| |||| ||||||| |||||| || |
|
|
| T |
31551266 |
aaatggtttaataggtttggttccatcttcgttgttctctctccctagcttgaccaacatctctttggacaacaataatcttgaaggaccaatacctatg |
31551365 |
T |
|
| Q |
400 |
tttcacgagggtgttaatgcaagttgggaaggaaataacttttgtcg |
446 |
Q |
| |
|
|||||| || ||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
31551366 |
tttcacaagcgtgttaaggcaacttgggaatcaaataacttttgtcg |
31551412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 285
Target Start/End: Complemental strand, 31534925 - 31534749
Alignment:
| Q |
109 |
tctcttggggaatcttcaataaggtatttgcgactcaataaccaaggggcgtttagtgggtttatcggtacaattgatgttatatcatccatgagattct |
208 |
Q |
| |
|
||||||||| ||||| | ||| ||||||||| ||||| ||||||||| | ||||||||| |||| |||||| ||||||||||||||||| | |
|
|
| T |
31534925 |
tctcttgggaaatctaaagtaaagtatttgcggttcaatgaccaaggggaatacagtgggttttcgggtagaattgacgttatatcatccatgagtaatt |
31534826 |
T |
|
| Q |
209 |
tgtctcaggcgtggcttaacaacaacgtgttcgcaggtccaattcctaacatgtctagttccactaatttgtttgat |
285 |
Q |
| |
|
||||||||||||||||| | |||||| ||| ||||| |||| || |||||||| | || |||| ||||||||||| |
|
|
| T |
31534825 |
tgtctcaggcgtggcttcagaacaacacattcacaggttcaatacccaacatgtccaattgcactcatttgtttgat |
31534749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 32357526 - 32357578
Alignment:
| Q |
337 |
actctctctagcttgaagaacatctctttggacaacaattttcttcaaggacc |
389 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32357526 |
actctccctaacttgaagaacatctctttggaccacaattttcttcaaggacc |
32357578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 389
Target Start/End: Complemental strand, 32350958 - 32350881
Alignment:
| Q |
312 |
tggtttggttccacattctctatgcactctctctagcttgaagaacatctctttggacaacaattttcttcaaggacc |
389 |
Q |
| |
|
||||||| |||||| |||| | | ||||||| ||| |||||||| ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
32350958 |
tggtttgattccaccttctttgttcactctccctaacttgaagagcatctctttggaccacaattttctttaaggacc |
32350881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University