View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_low_14 (Length: 461)
Name: NF6016_low_14
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 44953450 - 44953904
Alignment:
| Q |
1 |
cacagactttaatttagaataataacactacaatgtcactttaaatgcaaaaaatttataacatggtcatttacaacataacataatcatgtcaaagtca |
100 |
Q |
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| T |
44953450 |
cacatactttaatttagaataataacactacaatgtcactttaaatgcaaaaaatttataacatggtcatttacaacataacatagtcatgtcaaagtca |
44953549 |
T |
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| Q |
101 |
taaaataattatcacagtatcataacaatgttataaaaaatttctcgtaacataacaaagtcattacaaatttatcacatcgaaacatagtcataacaca |
200 |
Q |
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| T |
44953550 |
taaaataattatcacagtatcataacaatgttataaaaaatttctcgcaacataacaaagtcattacaaatttatcacatcgaaacatagtcataacata |
44953649 |
T |
|
| Q |
201 |
aacagttaacatatattctataggacttgatttaagacatgtcggcattgagtccaatttgatatcattttctcccttttccttgcctttcttggggttc |
300 |
Q |
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| T |
44953650 |
aacagttaacatatattctataggacttgatttaagacatgtcggcattgagtccaatttgatatcattttctcccttttccttgcctttcttggggttc |
44953749 |
T |
|
| Q |
301 |
aatttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagatgaagtatacaaaaattgaagtataccgaag |
400 |
Q |
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| T |
44953750 |
aatttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagattaagtatacaaaaattgaagtataccgaag |
44953849 |
T |
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| Q |
401 |
attgattgacatgagataaacataaaatttgagattccatgccaaatgatgatgt |
455 |
Q |
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| T |
44953850 |
attgattgacatgagataaacataaaatttgagattccatgccaaatgataatgt |
44953904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 303 - 378
Target Start/End: Complemental strand, 44994845 - 44994770
Alignment:
| Q |
303 |
tttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagatgaagtata |
378 |
Q |
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|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44994845 |
tttatgtactactacatatgtcaatttctgacaaattgttgatatatttcaaacaggttgaaatagatgaagtata |
44994770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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