View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_low_17 (Length: 399)
Name: NF6016_low_17
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 182 - 399
Target Start/End: Complemental strand, 31979311 - 31979085
Alignment:
| Q |
182 |
acttccaccacgttaagttagttatgttaactgatgcatttaaacacaagaatttttatctctagtattcattatgaaaaactttgttggtaatggtaaa |
281 |
Q |
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| T |
31979311 |
acttccaccacgttaagttagttatgttaactgatgcatttaaacacaagaatttttatctctagtattcattatgagaaactttgttggtaatggtaaa |
31979212 |
T |
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| Q |
282 |
atggtaaataactttttgtgtgaccattttgttggtagttaaaagaaattttgcatttattacatg---------tgatttggaatcgtactatagtgtc |
372 |
Q |
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| T |
31979211 |
gaggtaaataactttttgtgtgaccattttgttggtagttaaaagaaattttgcatttactacatgtactccatttgatttggaatcgtactatagtgtc |
31979112 |
T |
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| Q |
373 |
tgtcaattattctcatttcacatgaac |
399 |
Q |
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| T |
31979111 |
tgtcaattattctcatttcacatgaac |
31979085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 31979473 - 31979386
Alignment:
| Q |
16 |
ggattatgatgaaaggaatcttattagggtttaattttgttctttaagtgttgaactgttcggttcaaatcttatgctgtatgttaccaga |
106 |
Q |
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| T |
31979473 |
ggattatgatgaaaggaatctta---gggtttaattttgttctttaagtgttgaactgttcggttcaaatcttatgctgtatgttaccaga |
31979386 |
T |
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