View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_low_20 (Length: 362)
Name: NF6016_low_20
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 353
Target Start/End: Complemental strand, 27755787 - 27755443
Alignment:
| Q |
9 |
taggtttggagtcatggatttgcctagagagttcggagagggtgtataaaggactagaggcggtggcaatagcacctatggcgactatagcaagaaagca |
108 |
Q |
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| T |
27755787 |
taggtttggagtcatggatttgcctagagagttcggagagggtgtataaaggactagaggtggtggcaatagcacctatggcgactatagcaaggaagca |
27755688 |
T |
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| Q |
109 |
aacagggaggcgtattgagttaggtgctaatagcaaaaccacgtcgcctcgtcgaataccaaggtggagcaaagatcgggagagggcggagacatggatt |
208 |
Q |
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| T |
27755687 |
aacagggaagcgtattgagttaggtgctaatagcaaaaccacgtcgcctcgtcgaataccaaggtggagcaaagagtgggagagggcggaaacatggatt |
27755588 |
T |
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| Q |
209 |
ttgagctggcggaaggtaagggagttgccggtttcggcgtcagcgagggcgattgtgtcggcgacagaggaagtagattggaagaggaaggaggttaaag |
308 |
Q |
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| T |
27755587 |
ttgagctggcggaaggtaagggagttgccggtttcggcgtcagcgagggcgatggtgtcggcgacagaggaagttgattggaagaggaaggaggttaaag |
27755488 |
T |
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| Q |
309 |
agaggttgggatcggtgggaaggttaatgggttgtcttgatgatg |
353 |
Q |
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| T |
27755487 |
agaggttgggatcggtgggaaggttaatgggttgtcttggtgatg |
27755443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 37 - 347
Target Start/End: Complemental strand, 27766419 - 27766109
Alignment:
| Q |
37 |
gagttcggagagggtgtataaaggactagaggcggtggcaatagcacctatggcgactatagcaagaaagcaaacagggaggcgtattgagttaggtgct |
136 |
Q |
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| T |
27766419 |
gagttcagagacggtgtataaaggactacaggtggtggcaatagcacctatggcggcgacagcgaggaagcagacggggaaacgtatggagtttggtgcg |
27766320 |
T |
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| Q |
137 |
aatagcaaaaccacgtcgcctcgtcgaataccaaggtggagcaaagatcgggagagggcggagacatggattttgagctggcggaaggtaagggagttgc |
236 |
Q |
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|||||| ||| || ||||||||| || || || |||||| || ||||||||| |||||| | ||| ||||||||||||||| ||| | | | |
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| T |
27766319 |
tatagcataacgacatcgcctcgtttgattccgagactgagcaatgagcgggagaggtaggagacttccttttcgagctggcggaaggttaggaattcac |
27766220 |
T |
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| Q |
237 |
cggtttcggcgtcagcgagggcgattgtgtcggcgacagaggaagtagattggaagaggaaggaggttaaagagaggttgggatcggtgggaaggttaat |
336 |
Q |
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| T |
27766219 |
cggtttgggcgtcggtaagggcgatggtgtcggcggcggaggaagtggattggaagaggaatgaagttagagaaaggttctgatcagtgggaaggttgat |
27766120 |
T |
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| Q |
337 |
gggttgtcttg |
347 |
Q |
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|| |||||||| |
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| T |
27766119 |
ggattgtcttg |
27766109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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