View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6016_low_22 (Length: 357)

Name: NF6016_low_22
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6016_low_22
NF6016_low_22
[»] chr7 (4 HSPs)
chr7 (43-347)||(32705629-32705939)
chr7 (41-85)||(8105659-8105703)
chr7 (45-85)||(44394130-44394170)
chr7 (45-85)||(47233454-47233494)
[»] chr8 (3 HSPs)
chr8 (43-345)||(23144661-23144967)
chr8 (19-81)||(26047996-26048058)
chr8 (45-85)||(20172419-20172459)
[»] chr3 (5 HSPs)
chr3 (43-276)||(2309831-2310066)
chr3 (27-81)||(16346085-16346139)
chr3 (43-85)||(17237625-17237667)
chr3 (45-85)||(35870812-35870852)
chr3 (45-85)||(48266730-48266770)
[»] chr6 (8 HSPs)
chr6 (43-276)||(20420168-20420403)
chr6 (19-214)||(20415665-20415862)
chr6 (43-187)||(30518932-30519077)
chr6 (19-180)||(20417282-20417445)
chr6 (281-347)||(30518866-30518932)
chr6 (27-81)||(20418372-20418426)
chr6 (201-276)||(20415435-20415510)
chr6 (45-85)||(16711746-16711786)
[»] chr2 (4 HSPs)
chr2 (43-187)||(6050871-6051016)
chr2 (281-347)||(6050805-6050871)
chr2 (43-78)||(23736358-23736393)
chr2 (43-81)||(15408638-15408676)
[»] chr4 (7 HSPs)
chr4 (43-160)||(20265026-20265143)
chr4 (43-112)||(1393353-1393422)
chr4 (41-79)||(14874093-14874131)
chr4 (45-85)||(2500275-2500315)
chr4 (45-85)||(20036711-20036751)
chr4 (45-85)||(46092774-46092814)
chr4 (45-85)||(53830137-53830177)
[»] scaffold0585 (2 HSPs)
scaffold0585 (43-175)||(1455-1590)
scaffold0585 (97-175)||(3864-3943)
[»] chr1 (2 HSPs)
chr1 (19-78)||(22062977-22063036)
chr1 (43-79)||(20121055-20121091)
[»] scaffold0010 (1 HSPs)
scaffold0010 (43-85)||(136051-136093)
[»] scaffold0083 (1 HSPs)
scaffold0083 (25-81)||(34596-34652)
[»] scaffold0015 (1 HSPs)
scaffold0015 (45-85)||(22581-22621)
[»] scaffold0146 (2 HSPs)
scaffold0146 (43-85)||(5884-5926)
scaffold0146 (43-85)||(16532-16574)
[»] scaffold0076 (1 HSPs)
scaffold0076 (43-81)||(54536-54574)
[»] scaffold0203 (1 HSPs)
scaffold0203 (43-79)||(2339-2375)
[»] chr5 (2 HSPs)
chr5 (41-85)||(34596115-34596159)
chr5 (45-85)||(36991517-36991557)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 43 - 347
Target Start/End: Original strand, 32705629 - 32705939
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnnt--gaatattttattcattttta---attccaaacaagcatgttattttc 137  Q
    |||||| |||||||||||||||| |||||||||| ||||||||          ||||||||||||||||||||   ||||||||||||||||||||||||    
T  32705629 tgatgaaatcaagagctcattaaacatgtggaagaaaacatataaaaaaaaaagaatattttattcatttttattaattccaaacaagcatgttattttc 32705728  T
Q  138 ctagtaaaataatttggctatta-tacaaatggtcaattattagtactgttatggttttaataaaataattgacagcaggttgcaagttagtgattatct 236  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32705729 ctagtaaaataatttggctattaatccaaatggtcaattattagtactgttatggttttaataaaataattggcagcaggttgcaagttagtgattatct 32705828  T
Q  237 tatggagatataattagcccaaggtgctgattcatgttctcatctcaaaaaggccaataacatgattaatcacgttggcattatggtggttattgttcag 336  Q
     |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32705829 catggagatgtaattagcccaaggtgctgattcatgttctcatctcaaaaaggccaataacatgattaatcacgttggcattatggtggttactgttcag 32705928  T
Q  337 ttttgcctttg 347  Q
    |||||| ||||    
T  32705929 ttttgcttttg 32705939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 8105703 - 8105659
Alignment:
Q  41 aatgatgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    ||||||| |||||  || |||||||||||||||||||||||||||    
T  8105703 aatgatgtgatcataagttcattaagcatgtggaaggaaacatat 8105659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 44394130 - 44394170
Alignment:
Q  45 atgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    ||||||||||||| ||| ||| |||||||||||||||||||    
T  44394130 atgagatcaagagttcactaaacatgtggaaggaaacatat 44394170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 47233494 - 47233454
Alignment:
Q  45 atgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    ||||||||||||| ||| ||| |||||||||||||||||||    
T  47233494 atgagatcaagagttcactaaacatgtggaaggaaacatat 47233454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 43 - 345
Target Start/End: Complemental strand, 23144967 - 23144661
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcattttt--aattccaaacaagcatgttattttccta 140  Q
    ||||||||||||||||||||||| |||||||||||||||||||       ||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  23144967 tgatgagatcaagagctcattaaacatgtggaaggaaacatataaataa-tgaatattttattcatttttttaattccaaacaagcatgctattttccta 23144869  T
Q  141 gtaaaataat--ttggctattatac-aaatggtcaattattagtactgttatggttttaataaaataattgacagcaggttgcaagttagtgattatctt 237  Q
    ||||||||||  |||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||  || || ||||  |||||||||||||||     
T  23144868 gtaaaataatatttggctattaaaccaaatggtcaattattagtattgttatggttttaataaaataatttgcaacaagttgtgagttagtgattatctc 23144769  T
Q  238 atggagatataattagcccaaggtgctgattcatgttctcatctcaaaaaggccaataacatgattaatcacgttggcattatggtggttattgttcagt 337  Q
    ||| |||| |||| ||| ||||||||||||||||||||||  ||||||||||||||||| |||||||||||| |||||||||| || |||| ||||||||    
T  23144768 atgaagatgtaatcagctcaaggtgctgattcatgttctcggctcaaaaaggccaataaaatgattaatcacattggcattatagtagttactgttcagt 23144669  T
Q  338 tttgcctt 345  Q
    ||||||||    
T  23144668 tttgcctt 23144661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 26047996 - 26048058
Alignment:
Q  19 aaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaac 81  Q
    ||||| |||| ||||||||||||||||||| |||||||| ||| |||||||||||||||||||    
T  26047996 aaatcctctttaagagggggagaatgatgaaatcaagagttcactaagcatgtggaaggaaac 26048058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 20172419 - 20172459
Alignment:
Q  45 atgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    ||||||||||||| ||| ||| |||||||||||||||||||    
T  20172419 atgagatcaagagttcactaaacatgtggaaggaaacatat 20172459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 8e-80; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 43 - 276
Target Start/End: Complemental strand, 2310066 - 2309831
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcattttt-aattccaaacaagcatgttattttcctag 141  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  2310066 tgatgagatcaagagctcattaagcatgtggaaggaaacatataaaaaaatgaatattttattcattttttaattccaaacaagcatgctattttcctag 2309967  T
Q  142 taaaataatttggctatta-tacaaatggtcaattattagtactgttatggttttaataaaataattgacagcaggttgcaagttagtgattatcttatg 240  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||  ||| ||||||||||| |||    
T  2309966 taaaataatttggctattaatccaaatggtcaattattagcactgttatggttctaataaaataattggcagcaggttgtgagtaagtgattatctcatg 2309867  T
Q  241 gagatataattagcccaaggtgctgattcatgttct 276  Q
    ||||| |||||| ||||| |||||||||||||||||    
T  2309866 gagatgtaattatcccaaagtgctgattcatgttct 2309831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 16346139 - 16346085
Alignment:
Q  27 ttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaac 81  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  16346139 ttgaagagggggagaatgatgagatcaaaagttcattaagcatgtggaaggaaac 16346085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 17237667 - 17237625
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    |||||||||||| ||||||||||| |||||||| |||||||||    
T  17237667 tgatgagatcaaaagctcattaagtatgtggaaagaaacatat 17237625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 35870812 - 35870852
Alignment:
Q  45 atgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    ||||||||||||| ||| ||| |||||||||||||||||||    
T  35870812 atgagatcaagagttcactaaacatgtggaaggaaacatat 35870852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 48266730 - 48266770
Alignment:
Q  45 atgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    ||||||||||||| ||| ||| |||||||||||||||||||    
T  48266730 atgagatcaagagttcactaaacatgtggaaggaaacatat 48266770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 5e-75; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 43 - 276
Target Start/End: Complemental strand, 20420403 - 20420168
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcattttt-aattccaaacaagcatgttattttcctag 141  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  20420403 tgatgagatcaagagctcattaagcatgtggaaggaaacatataaaaaaatgaatattttattcattttttaattccaaacaagcatgctattttcctag 20420304  T
Q  142 taaaataatttggctatta-tacaaatggtcaattattagtactgttatggttttaataaaataattgacagcaggttgcaagttagtgattatcttatg 240  Q
    ||||||||||||||||||| | |||||||||||||||||| || ||||||||| |||||||||||||| ||||| ||||  ||| ||||||||| | |||    
T  20420303 taaaataatttggctattaatccaaatggtcaattattagcacagttatggttctaataaaataattggcagcaagttgtgagtaagtgattatttcatg 20420204  T
Q  241 gagatataattagcccaaggtgctgattcatgttct 276  Q
    ||||| |||||| |||||||||||||||||||||||    
T  20420203 gagatgtaattatcccaaggtgctgattcatgttct 20420168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 20415862 - 20415665
Alignment:
Q  19 aaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttatt-catttttaattc 117  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||| | ||||||||||    
T  20415862 aaatcctcttgaagagggggagaatgatgagatcaagagatcattaagcatgtggaaggaaacatataaaaaaatgaatattttattccttttttaattc 20415763  T
Q  118 caaacaagcatgttattttcctagtaaaataatttggctatt-atacaaatggtcaattattagtactgttatggttttaataaaataattgacagca 214  Q
    |||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| || ||||||||| |||||||||||||| |||||    
T  20415762 caaacaagcatgctattttcctagtaaaataatttggctattaatccaaatggtcaattattagcacagttatggttctaataaaataattggcagca 20415665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 43 - 187
Target Start/End: Complemental strand, 30519077 - 30518932
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnn-tgaatattttattcatttttaattccaaacaagcatgttattttcctag 141  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30519077 tgatgagatcaagagctcattaagcatgtggaaggaaacatataaaaaaaatgaatattttattcatttttaattccaaacaagcatgttattttcctag 30518978  T
Q  142 taaaataatttggctattatacaaatggtcaattattagtactgtt 187  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  30518977 taaaataatttggctattatacgaatggtcaattattagtactgtt 30518932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 20417282 - 20417445
Alignment:
Q  19 aaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattca-tttttaattc 117  Q
    ||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||| ||||||||||    
T  20417282 aaatcctcttgaagacggggagaatgatgagatcaagagcttattaagcatgtggaaggaaacatataaaaaaatgaatattttattcattttttaattc 20417381  T
Q  118 caaacaagcatgttattttcctagtaaaataatttggctatt-atacaaatggtcaattattag 180  Q
    |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  20417382 caaacaagcatgctattttcctagtaaaataatttggctattaatccaaatggtcaattattag 20417445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 30518932 - 30518866
Alignment:
Q  281 tcaaaaaggccaataacatgattaatcacgttggcattatggtggttattgttcagttttgcctttg 347  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518932 tcaaaaatgccaataacatgattaatcacgttggcattatggtggttattgttcagttttgcctttg 30518866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 20418426 - 20418372
Alignment:
Q  27 ttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaac 81  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  20418426 ttgaagagggggagaatgatgagatcaaaagttcactaagcatgtggaaggaaac 20418372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 20415510 - 20415435
Alignment:
Q  201 aataattgacagcaggttgcaagttagtgattatcttatggagatataattagcccaaggtgctgattcatgttct 276  Q
    |||||||| ||||| ||||  ||| ||||||||| | |||||||| |||||| |||||||||||||||||||||||    
T  20415510 aataattggcagcaagttgtgagtaagtgattatttcatggagatgtaattatcccaaggtgctgattcatgttct 20415435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 16711786 - 16711746
Alignment:
Q  45 atgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    ||||||||||||| ||| ||| |||||||||||||||||||    
T  16711786 atgagatcaagagttcactaaacatgtggaaggaaacatat 16711746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 43 - 187
Target Start/End: Complemental strand, 6051016 - 6050871
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnn-tgaatattttattcatttttaattccaaacaagcatgttattttcctag 141  Q
    |||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6051016 tgatgagatcaaaagctcattaagcatgtggaaggaaacatataaaaaaaatgaatattttattcatttttaattccaaacaagcatgttattttcctag 6050917  T
Q  142 taaaataatttggctattatacaaatggtcaattattagtactgtt 187  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  6050916 taaaataatttggctattagacaaatggtcaattattagtactgtt 6050871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 6050871 - 6050805
Alignment:
Q  281 tcaaaaaggccaataacatgattaatcacgttggcattatggtggttattgttcagttttgcctttg 347  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6050871 tcaaaaatgccaataacatgattaatcacgttggcattatggtggctattgttcagttttgcctttg 6050805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 23736393 - 23736358
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaagga 78  Q
    ||||||||||||||||||||||||||||||||||||    
T  23736393 tgatgagatcaagagctcattaagcatgtggaagga 23736358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 15408638 - 15408676
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaac 81  Q
    |||||||||||| || |||||||||||||||||||||||    
T  15408638 tgatgagatcaaaagttcattaagcatgtggaaggaaac 15408676  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 43 - 160
Target Start/End: Complemental strand, 20265143 - 20265026
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcatttttaattccaaacaagcatgttattttcctagt 142  Q
    |||||||||||||||||| ||||||||||||||||||||||||       | |||||||||||||||||||||||||||||| |||||||||||||||||    
T  20265143 tgatgagatcaagagctcgttaagcatgtggaaggaaacatataaaaaaataaatattttattcatttttaattccaaacaaacatgttattttcctagt 20265044  T
Q  143 aaaataatttggctatta 160  Q
    ||||||||||||||||||    
T  20265043 aaaataatttggctatta 20265026  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 1393353 - 1393422
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcattttt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||||    
T  1393353 tgatgagatcaagagctcattaagcatgtggaaggaaacatataaaaaaatgaatattttatttattttt 1393422  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 14874131 - 14874093
Alignment:
Q  41 aatgatgagatcaagagctcattaagcatgtggaaggaa 79  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  14874131 aatgatgagatcataagctcattaagcatgtggaaggaa 14874093  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 2500315 - 2500275
Alignment:
Q  45 atgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    |||||||||| || ||| |||||||||||||||||||||||    
T  2500315 atgagatcaaaagttcactaagcatgtggaaggaaacatat 2500275  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 20036711 - 20036751
Alignment:
Q  45 atgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    ||||||||||||| ||| ||| |||||||||||||||||||    
T  20036711 atgagatcaagagttcactaaacatgtggaaggaaacatat 20036751  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 46092774 - 46092814
Alignment:
Q  45 atgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    ||||||||||||| ||| ||| |||||||||||||||||||    
T  46092774 atgagatcaagagttcactaaacatgtggaaggaaacatat 46092814  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 53830177 - 53830137
Alignment:
Q  45 atgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    ||||||||||||| ||| ||| |||||||||||||||||||    
T  53830177 atgagatcaagagttcactaaacatgtggaaggaaacatat 53830137  T

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Target: scaffold0585 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 1590 - 1455
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnn--tgaatattttattcattttt-aattccaaacaagcatgttattttcct 139  Q
    |||| |||||||||||||||||||||||||||||||||||||          ||  |||||||||||||||| ||||||||||||||||| |||||||||    
T  1590 tgataagatcaagagctcattaagcatgtggaaggaaacatacaaaaaacaatgtttattttattcattttttaattccaaacaagcatgctattttcct 1491  T
Q  140 agtaaaataatttggctattatacaaatggtcaatt 175  Q
    |||||||||||||||||||||  | |||||||||||    
T  1490 agtaaaataatttggctattaatccaatggtcaatt 1455  T

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Target: scaffold0585; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 3943 - 3864
Alignment:
Q  97 tattttattcattttt-aattccaaacaagcatgttattttcctagtaaaataatttggctattatacaaatggtcaatt 175  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||    
T  3943 tattttattcattttttaattccaaacaagcatgctattttcctagtaaaataatttggctattaatccaatggtcaatt 3864  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 22063036 - 22062977
Alignment:
Q  19 aaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaagga 78  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  22063036 aaatcctcttgaagagggggagaatgatgagatcaagagcttattaaacatgtggaagga 22062977  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 20121055 - 20121091
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaa 79  Q
    |||||||||||  ||||||||||||||||||||||||    
T  20121055 tgatgagatcataagctcattaagcatgtggaaggaa 20121091  T

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Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 136051 - 136093
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  136051 tgatgagatcaagagctcattaagcatgtggaaggaaacatat 136093  T

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Target: scaffold0083 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 34596 - 34652
Alignment:
Q  25 tcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaac 81  Q
    |||||||||||||| |||||||||||||| ||| || ||||| ||||||||||||||    
T  34596 tcttgaagagggggggaatgatgagatcatgagttctttaagtatgtggaaggaaac 34652  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 22581 - 22621
Alignment:
Q  45 atgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  22581 atgagatcaagaggtcactaagcatgtggaaggaaacatat 22621  T

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Target: scaffold0146 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 5884 - 5926
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    |||||||||||| ||||||||||| |||||||| |||||||||    
T  5884 tgatgagatcaaaagctcattaagtatgtggaaagaaacatat 5926  T

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Target: scaffold0146; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 16532 - 16574
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    |||||||||||| ||||||||||| |||||||| |||||||||    
T  16532 tgatgagatcaaaagctcattaagtatgtggaaagaaacatat 16574  T

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Target: scaffold0076 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 54536 - 54574
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaaac 81  Q
    |||||||||||| || |||||||||||||||||||||||    
T  54536 tgatgagatcaaaagttcattaagcatgtggaaggaaac 54574  T

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Target: scaffold0203 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 2375 - 2339
Alignment:
Q  43 tgatgagatcaagagctcattaagcatgtggaaggaa 79  Q
    |||||||||||  ||||||||||||||||||||||||    
T  2375 tgatgagatcataagctcattaagcatgtggaaggaa 2339  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 34596115 - 34596159
Alignment:
Q  41 aatgatgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    ||||||| ||||| || ||||||||| ||||||||||||||||||    
T  34596115 aatgatgtgatcatgaactcattaagtatgtggaaggaaacatat 34596159  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 36991517 - 36991557
Alignment:
Q  45 atgagatcaagagctcattaagcatgtggaaggaaacatat 85  Q
    ||||||||||||| ||| ||| |||||||||||||||||||    
T  36991517 atgagatcaagagttcactaaacatgtggaaggaaacatat 36991557  T

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