View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6016_low_25 (Length: 303)
Name: NF6016_low_25
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 4624954 - 4624671
Alignment:
| Q |
1 |
tttgagatgacttcctaaccttgtgaacacaaaagaatagggaggcctaaaatttcatcaggtaaactacaacaacaatcaataatttcatataccttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4624954 |
tttgagatgacttcctaaccttgtgaacacaaaagaacagggaggcctaaaatttcatcaggtaaactacaacaacaatcaataatttcatataccttaa |
4624855 |
T |
|
| Q |
101 |
gctcataacactaatgattcccttcaagtgttggaagctctcaatgtgatcaaaatgaaagtattttcctgtattaagtgtgccagaaaatcactccctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4624854 |
gctcataacactaatgattcccttcaagtgttggaagctctcaatgtgatcaaaatgaaagtattttcctgtattaagtgtgacagaaaatcactccctt |
4624755 |
T |
|
| Q |
201 |
caccaacatattgaattttcgttaaacacctagaacgtgttgggacatttgaaggtttgtaattgaaacatgaactgagcagtg |
284 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4624754 |
caccaacatactgaattttcgttaaacacctagaacgtgttgggacatttgtaggtttgtaattgaaacatgaactgagcagtg |
4624671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University