View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_low_27 (Length: 290)
Name: NF6016_low_27
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 8234026 - 8233764
Alignment:
| Q |
13 |
aatatttaagtttaaatgacttgaggaaaagtgttgaaaattaaagaagtttcatataggtgtttcatttttgagagtaagaaacactaatgtgtttata |
112 |
Q |
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| T |
8234026 |
aatatttaagtttaaatgacttgaggaaaagtgttgaaaattaaagaagtttcatataggtgtttcatttttgagagtaagaaacactaatgtgtttata |
8233927 |
T |
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| Q |
113 |
aattgcagagagtttgagtttattgattcaaatattttgaacatagaaacccactttggttagtttagtgtccgttgaaatattgatttaggtcttaaaa |
212 |
Q |
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| T |
8233926 |
aattgcacagagtttgagtttattgattcaaatattttgaatatagaaacccactttggttagtttggtgtccgttgaaatattgatttaggtcttaata |
8233827 |
T |
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| Q |
213 |
gcgtgttcatttttaaggtctcatgttcgattctctccaatattaatttggatgggtaatttg |
275 |
Q |
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| T |
8233826 |
gtgtgttcatttttaaggtctcatgttcgattctctccgatattaatttggatgggtaatttg |
8233764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 7823697 - 7823649
Alignment:
| Q |
212 |
agcgtgttcatttttaaggtctcatgttcgattctctccaatattaatt |
260 |
Q |
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| T |
7823697 |
agcgtgctctttcttaaagtcgcatgttcgattctctccaatattaatt |
7823649 |
T |
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