View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_low_29 (Length: 278)
Name: NF6016_low_29
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 56234592 - 56234351
Alignment:
| Q |
17 |
tcaacaacttcatttatttccaaaacgcacagcatcacggtatatgatttacagctcaaccttttgggatgattttccgaaacccacccatcaaaagaat |
116 |
Q |
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| T |
56234592 |
tcaacaacttcatttatttccaaaatgcacaacatcacggtatatgatttacaactcaaccttttgggatgattttccgaaacccacccatcaaaagaat |
56234493 |
T |
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| Q |
117 |
cgtgatttctcaaacccagacacctagattcaaacctagaaaaatcaaagcaataaaactaaatccaaattggaatgaatctggnnnnnnnnncggaagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | ||||| |
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| T |
56234492 |
cgtgatttctcaaacccagacacctagattcaaacctagaaaaaccaaagcaataaaactaaatccaaattggaatgaatctcg--aaaaaaactgaagg |
56234395 |
T |
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| Q |
217 |
aatcccaacagaaaatggttctaatctgaagggatccaagaatg |
260 |
Q |
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| T |
56234394 |
aatcccaacagaaaatggttccgatctgaagggatccaagaatg |
56234351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 13750068 - 13749831
Alignment:
| Q |
17 |
tcaacaacttcatttatttccaaaacgcacagcatcacggtatatgatttacagctcaaccttttgggatgattttccgaaacccacccatcaaaagaat |
116 |
Q |
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| T |
13750068 |
tcaacaacttcatttatttccaaaacgcacagcatcacggtatatgatttacagctcaaccttttgggatgattttcagaaacaca----tcaaaagaat |
13749973 |
T |
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| Q |
117 |
cgtgatttctcaaacccagacacctagattcaaacctagaaaaatcaaagcaataaaactaaatccaaattggaatgaatctggnnnnnnnnncggaagg |
216 |
Q |
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| T |
13749972 |
cgtgatttctcaaacccagacacctagattcaaacctagaataaccaaagcattaaaactaaatccaaattggaatgaatttg--aaaaaaaacggaagg |
13749875 |
T |
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| Q |
217 |
aatcccaacagaaaatggttctaatctgaagggatccaagaatg |
260 |
Q |
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| T |
13749874 |
aatcccaacagaaattggattagatctgaagggatccaagaatg |
13749831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 199
Target Start/End: Original strand, 34014826 - 34014985
Alignment:
| Q |
34 |
ttccaaaacgcacagcatcacggtatatgatttacagctcaaccttttgggatgattttccgaaacccacccatcaaaagaatcgtgatttctcaaaccc |
133 |
Q |
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| T |
34014826 |
ttccaaaacgcacaacatcgcaatatataacttagagctcaac-ttttgggatgatttttcaa----tacccatcaaaagaatcgtgatttctcaaaacc |
34014920 |
T |
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| Q |
134 |
agacacctagattcaaacctagaaaaatcaaagcaataaaactaaatccaaattggaatgaatctg |
199 |
Q |
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|| ||||| ||||||||| || |||| |||| || ||| ||||||||||||||||||||||||| |
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| T |
34014921 |
ggatacctaaattcaaacccag-aaaaccaaaataagaaatctaaatccaaattggaatgaatctg |
34014985 |
T |
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