View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_low_31 (Length: 270)
Name: NF6016_low_31
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_31 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 30518629 - 30518889
Alignment:
| Q |
10 |
ataattctatgtaatggaaaatgaagtctgaggccgtttacaactttcattctcccatgtagcggttatcattcacacaatcactaccatgcatttcatt |
109 |
Q |
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| T |
30518629 |
ataattctatgtaagggtaaatgaagtctgaggccgtttacaactttaattctcccatgtagctgttatcattcacacaatcactaccatgcatttcatt |
30518728 |
T |
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| Q |
110 |
tccaattgaatgggccaatagcaattaataatctctccatttgattgtcaagccgttacttctcaaaatgaagtgaattggctcatttaattcttgaagt |
209 |
Q |
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| T |
30518729 |
tccaattgaatgggccaatagcaattaataatctctccatttgattgtcaagccgttacttctcaaaatgaagtgaattggctcatttaattcttgaagt |
30518828 |
T |
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| Q |
210 |
gtgagtagtttccaactgatttatgcaaaggaaataccaaaggcaaaactgaacaataacc |
270 |
Q |
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| T |
30518829 |
gtgagtagtttccaactgatttatgcaaaggaaataccaaaggcaaaactgaacaataacc |
30518889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 6050568 - 6050825
Alignment:
| Q |
10 |
ataattctatgtaatggaaaatgaagtctgaggccgtttacaactttcattctcccatgtagcggttatcattcacacaatcactaccatgcatttcatt |
109 |
Q |
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| T |
6050568 |
ataattctatgtaagggcaaatgaagtctgaggccgtttacaactttcattctcccatgtagctgttatcattcacacaatcactaccatgcatttcatt |
6050667 |
T |
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| Q |
110 |
tccaattgaatgggccaatagcaattaataatctctccatttgattgtcaagccgttacttctcaaaatgaagtgaattggctcatttaattcttgaagt |
209 |
Q |
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| T |
6050668 |
ttcaattgaatgggccaatagcaattaataatctctccatttgattgtcaagccgttacttctcaaaatgaagtgaattggctcatttaattcttgaagt |
6050767 |
T |
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| Q |
210 |
gtgagtagtttccaactgatttatgcaaaggaaataccaaaggcaaaactgaacaata |
267 |
Q |
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| T |
6050768 |
gtgagtagtttccaactgatttatgcaaaggaaataccaaaggcaaaactgaacaata |
6050825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 48 - 270
Target Start/End: Complemental strand, 32706139 - 32705916
Alignment:
| Q |
48 |
tacaactttcattctcccatgtagcggttatcattcacacaatcactac-catgcatttcatttccaattgaatgggccaatagcaattaataatctctc |
146 |
Q |
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| T |
32706139 |
tacaactttcattctcccatgtagctgttatcattcacacaatcactacgcatgcatttcatttccagttgaatggggcaatagcaattaagaatctctc |
32706040 |
T |
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| Q |
147 |
catttgattgtcaagccgttacttctcaaaatgaagtgaattggctcatttaattcttgaagtgtgagtagtttccaactgatttatgcaaaggaaatac |
246 |
Q |
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| T |
32706039 |
catttgattgtcaagccgttacttctcaaaatgaagtgaattggctcatttaatttttgaagtgtgagttgtttccaactgatttatgcaaaggaaatac |
32705940 |
T |
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| Q |
247 |
caaaggcaaaactgaacaataacc |
270 |
Q |
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| T |
32705939 |
caaaagcaaaactgaacagtaacc |
32705916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 23143010 - 23143135
Alignment:
| Q |
17 |
tatgtaatggaaaatgaagtctgaggccgtttacaactttcattctcccatgtagcggttatcattcacacaatcactaccatgcatttcatttccaatt |
116 |
Q |
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| T |
23143010 |
tatgtaatgacaaatgaagtgtgagcccgtttacaactttcattctcccacgtagttgttatcattcacacaatcagtaccatgcatttcatttccaatt |
23143109 |
T |
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| Q |
117 |
gaatgggccaatagcaattaataatc |
142 |
Q |
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| T |
23143110 |
gaatgtgccgatagcaattaagaatc |
23143135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 23144592 - 23144681
Alignment:
| Q |
176 |
aatgaagtgaattggctcatttaattcttgaagtgtgagtagtttccaactgatttatgcaaaggaaataccaaaggcaaaactgaacaataac |
269 |
Q |
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| T |
23144592 |
aatgaagggaattgactcatttaatttttgtagtgtgagtagtttccaacttatttatgcaaaggaaat----aaggcaaaactgaacagtaac |
23144681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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