View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_low_32 (Length: 269)
Name: NF6016_low_32
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_32 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 39082415 - 39082658
Alignment:
| Q |
18 |
atgaattgctacctgccaaattaccaatttcaaataacttcggcattctcaaccaatactcataatcatcccttattttctcatcagaatgcaacataat |
117 |
Q |
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| T |
39082415 |
atgaattgctacctgccaaattaccaacttcaaataacttcggcattctcaaccaacactcataatcatcccttattttctcatcagaacgcaacataat |
39082514 |
T |
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| Q |
118 |
catcttgttcatctccaaagcaacttttccaatcccacattccagaatctcccccactttcattgttaccccaccaaagatcgctgcatttccaaaataa |
217 |
Q |
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| T |
39082515 |
catcttgttcatctccaaagcaacttttccaatcccacattccagaatctcccccactttcattgttaccccaccaaagatcgctgcatttccaaaataa |
39082614 |
T |
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| Q |
218 |
ccctcgtcaagtggaggaatcatccttggtctaacacctatgct |
261 |
Q |
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| T |
39082615 |
ccctcgtcaagtggaggaatcatccttggtctaacacctatgct |
39082658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 48 - 258
Target Start/End: Original strand, 39088099 - 39088309
Alignment:
| Q |
48 |
caaataacttcggcattctcaaccaatactcataatcatcccttattttctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttcc |
147 |
Q |
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|||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| | | |||||| |
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| T |
39088099 |
caaacaactttggcattttcaaccaacactcataatcatcccttattttctcatcagaacgtaacataatcatcttgttcatctccaatgaacattttcc |
39088198 |
T |
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| Q |
148 |
aatcccacattccagaatctcccccactttcattgttaccccaccaaagatcgctgcatttccaaaataaccctcgtcaagtggaggaatcatccttggt |
247 |
Q |
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| T |
39088199 |
tatcccacattccagaatctcccctgctttcattgttacactaccaatgatccctgcatttccaaaataatcctcgtcaagtggaggagtcatccttggt |
39088298 |
T |
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| Q |
248 |
ctaacacctat |
258 |
Q |
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| T |
39088299 |
ctaacacctat |
39088309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 55 - 258
Target Start/End: Original strand, 39091497 - 39091700
Alignment:
| Q |
55 |
cttcggcattctcaaccaatactcataatcatcccttattttctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttccaatccca |
154 |
Q |
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| T |
39091497 |
cttcggcattctcaaccaacactcatagtaatcccttattttctcatcagaatgtgacataatcatcttgtttaactccaaagcaacttttccaatccca |
39091596 |
T |
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| Q |
155 |
cattccagaatctcccccactttcattgttaccccaccaaagatcgctgcatttccaaaataaccctcgtcaagtggaggaatcatccttggtctaacac |
254 |
Q |
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| T |
39091597 |
cattccagaatctcccctgctttcattgttacaccaccaatcattgaagcatttccaaaataatcctcctcaagcggaggaatcatccttggtctaacac |
39091696 |
T |
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| Q |
255 |
ctat |
258 |
Q |
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|||| |
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| T |
39091697 |
ctat |
39091700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 39071056 - 39071173
Alignment:
| Q |
63 |
ttctcaaccaatactcataatcatcccttattttctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttccaatcccacattccag |
162 |
Q |
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||||||||||| |||| |||| | ||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| || |||| || || |
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| T |
39071056 |
ttctcaaccaagactcgtaatggttccttattttctcatcagaatgtaacaaaatcatcttgtttatctccaaagcaacttttccgatttcacactctag |
39071155 |
T |
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| Q |
163 |
aatctcccccactttcat |
180 |
Q |
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| T |
39071156 |
aacctccccgactttcat |
39071173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 4589 - 4630
Alignment:
| Q |
96 |
tctcatcagaatgcaacataatcatcttgttcatctccaaag |
137 |
Q |
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| T |
4589 |
tctcatcagagtgcaaaacaatcatcttgttcatctccaaag |
4630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 15744933 - 15744880
Alignment:
| Q |
96 |
tctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttccaa |
149 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||| |||| |||| |
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| T |
15744933 |
tctcatcagattgcaaagcaatcatcttgttcatctccaaagcacctttaccaa |
15744880 |
T |
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