View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_low_39 (Length: 248)
Name: NF6016_low_39
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_39 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 14020416 - 14020656
Alignment:
| Q |
11 |
atactaacaaaaaactggttcccaggatgtgtgtcctatatactccatatattatcaaatatagttatcaatttctcctttcataaaataatgagtaaag |
110 |
Q |
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| T |
14020416 |
atactaacaaaaaactggttcccaggatgtgtgtcctatatactccatatattatcaaatatagttatcaatttctcctttcataaaataatgagtaaag |
14020515 |
T |
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| Q |
111 |
aaattagatacattattgagaatacttgattgagattatagta---nnnnnnnnnacaaacaaggtaagtacgaaataacaatgtgacagtaattttagc |
207 |
Q |
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| T |
14020516 |
aaattagatacattattgaaaatacttgattgagattatagtattttttttttttacaaacaaggtaagtacgaaataacaatgtgacagtaattttagc |
14020615 |
T |
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| Q |
208 |
aaaaattacatttagaaattttgacaaaatcacattatgac |
248 |
Q |
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| T |
14020616 |
aaaaattacatttagaaattttgacaaaatcacattatgac |
14020656 |
T |
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