View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_low_40 (Length: 246)
Name: NF6016_low_40
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 12848954 - 12849165
Alignment:
| Q |
16 |
caggtagaggtagcaatagagaactaaccatttccctttccatcatctctgccatattttcagcacctttctctcataaagcttttccaccaattcagct |
115 |
Q |
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| T |
12848954 |
caggtagaggtagcaatagagaactaaccatttccctttccatcatctctgccatattttcagcacctttctctcataaagcttttccaccaattcagct |
12849053 |
T |
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| Q |
116 |
caaccaacagtaacctaggtgatgttcaaatagtagagattgtttttgcgagaaaacaaagaaaactatcattatagggttttgttttatcttcttattt |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12849054 |
caaccaacagtaacctaggtgatgttcaaatagaagagattgtttttgcgagaaaacaaagaaaactatcattatagggttttgttttatcttcttattt |
12849153 |
T |
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| Q |
216 |
aattaaccctac |
227 |
Q |
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|||||||||||| |
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| T |
12849154 |
aattaaccctac |
12849165 |
T |
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