View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6016_low_42 (Length: 241)

Name: NF6016_low_42
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6016_low_42
NF6016_low_42
[»] chr3 (3 HSPs)
chr3 (42-227)||(45297549-45297734)
chr3 (134-227)||(54829566-54829659)
chr3 (42-84)||(49160987-49161029)
[»] chr7 (6 HSPs)
chr7 (42-227)||(40320273-40320458)
chr7 (37-87)||(35771262-35771312)
chr7 (42-87)||(24995852-24995897)
chr7 (42-87)||(40319606-40319651)
chr7 (101-141)||(36662542-36662582)
chr7 (42-74)||(40257580-40257612)
[»] chr5 (5 HSPs)
chr5 (42-79)||(12201377-12201414)
chr5 (42-76)||(26711568-26711602)
chr5 (42-76)||(26981305-26981339)
chr5 (42-79)||(6803948-6803985)
chr5 (43-87)||(4789521-4789565)
[»] chr4 (7 HSPs)
chr4 (40-156)||(231983-232099)
chr4 (42-87)||(41261893-41261938)
chr4 (37-76)||(20351325-20351364)
chr4 (41-87)||(25970105-25970151)
chr4 (42-87)||(231436-231481)
chr4 (42-87)||(23383310-23383355)
chr4 (42-87)||(39429940-39429985)
[»] chr2 (1 HSPs)
chr2 (42-87)||(6085704-6085749)
[»] chr6 (1 HSPs)
chr6 (42-78)||(28975340-28975376)
[»] chr8 (1 HSPs)
chr8 (42-84)||(35943845-35943887)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 45297549 - 45297734
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcctactatgggaannnnnnnnncaaccattagatcaacaaggaacattgatcttatcatgatctctc 141  Q
    ||||||||||||||||||||||||||||||||||| |  |||||||          ||||||||||||||||||||||||||||||||||||||||||||    
T  45297549 ggtggggtttagtatgggaaaggagagttgtttcccatcatgggaaagttttttttaaccattagatcaacaaggaacattgatcttatcatgatctctc 45297648  T
Q  142 atcactagattttttgtttccactttcttcaaccttttaatcttgaatgaaaacaacccagtggcttctttcttcatgcactaatt 227  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  45297649 atcactagattttttgtttccactttcttcaaccttttaaccttgaatgaaaacagcccagtggcttctttcttcatgcactaatt 45297734  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 54829659 - 54829566
Alignment:
Q  134 gatctctcatcactagattttttgtttccactttcttcaaccttttaatcttgaatgaaaacaacccagtggcttctttcttcatgcactaatt 227  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||    
T  54829659 gatctctcatcactaaattttttatttccactttcttcaaccttttaaccttgaatgaaaacagcccagtggcttcttttttcatgcactaatt 54829566  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 49160987 - 49161029
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcctactatgg 84  Q
    |||||||||||| |||||||||| |||||||||||||| ||||    
T  49160987 ggtggggtttagcatgggaaaggggagttgtttcctaccatgg 49161029  T

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Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 42 - 227
Target Start/End: Complemental strand, 40320458 - 40320273
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcctactatgggaannnnnnnnncaaccattagatcaacaaggaacattgatcttatcatgatctctc 141  Q
    |||||||||||| |||||||||||||||||||||| || |||| ||         |||||||||||||||||||||||||||||||||||||||||||||    
T  40320458 ggtggggtttagcatgggaaaggagagttgtttcccaccatggaaaagtttttttcaaccattagatcaacaaggaacattgatcttatcatgatctctc 40320359  T
Q  142 atcactagattttttgtttccactttcttcaaccttttaatcttgaatgaaaacaacccagtggcttctttcttcatgcactaatt 227  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||    
T  40320358 atcactagattttttgtttccactttcttcaaccttttaaccttgaatgaaaacagcccagtggcttctttcttcatgcattaatt 40320273  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 35771312 - 35771262
Alignment:
Q  37 ttattggtggggtttagtatgggaaaggagagttgtttcctactatgggaa 87  Q
    |||| |||||||||||||||||||||| | |||||||||| || |||||||    
T  35771312 ttatcggtggggtttagtatgggaaagcaaagttgtttcccaccatgggaa 35771262  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 24995852 - 24995897
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcctactatgggaa 87  Q
    |||||||||||| |||||||||| ||||||||||| || |||||||    
T  24995852 ggtggggtttagaatgggaaaggggagttgtttcccaccatgggaa 24995897  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 40319606 - 40319651
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcctactatgggaa 87  Q
    |||||||||||||||||||| |||||||| ||||| || |||||||    
T  40319606 ggtggggtttagtatgggaatggagagttatttcccaccatgggaa 40319651  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 36662582 - 36662542
Alignment:
Q  101 cattagatcaacaaggaacattgatcttatcatgatctctc 141  Q
    |||||||||||  ||||||||||||||||||||| ||||||    
T  36662582 cattagatcaaacaggaacattgatcttatcatggtctctc 36662542  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 40257580 - 40257612
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgttt 74  Q
    ||||||||||||||||||||| |||||||||||    
T  40257580 ggtggggtttagtatgggaaatgagagttgttt 40257612  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 12201377 - 12201414
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcctac 79  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12201377 ggtggggtttagtatgggaaaggagagttgtttcctac 12201414  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 26711568 - 26711602
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcc 76  Q
    |||||||||||||||||||||||| ||||||||||    
T  26711568 ggtggggtttagtatgggaaaggaaagttgtttcc 26711602  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 26981305 - 26981339
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcc 76  Q
    |||||||||||||||||||||||| ||||||||||    
T  26981305 ggtggggtttagtatgggaaaggaaagttgtttcc 26981339  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 6803948 - 6803985
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcctac 79  Q
    |||||||||||||||||||||||  |||||||||||||    
T  6803948 ggtggggtttagtatgggaaagggaagttgtttcctac 6803985  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 4789521 - 4789565
Alignment:
Q  43 gtggggtttagtatgggaaaggagagttgtttcctactatgggaa 87  Q
    ||||||||||| |||||||||| ||||||||||| || |||||||    
T  4789521 gtggggtttagcatgggaaaggggagttgtttcccaccatgggaa 4789565  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 232099 - 231983
Alignment:
Q  40 ttggtggggtttagtatgggaaaggagagttgtttcctactatgggaannnnnnnnncaaccattagatcaacaaggaacattgatcttatcatgatctc 139  Q
    |||||||||||||||||||||||||  |||||||||| || |||||||          ||||||||||| ||  ||||||||||||||||||||  ||||    
T  232099 ttggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagataaatgaggaacattgatcttatcatagtctc 232000  T
Q  140 tcatcactagatttttt 156  Q
    ||  ||||| |||||||    
T  231999 tccacactaaatttttt 231983  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 41261938 - 41261893
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcctactatgggaa 87  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||    
T  41261938 ggtggggtttagtatgggaaatgagagttgtttcctaccatgggaa 41261893  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 20351364 - 20351325
Alignment:
Q  37 ttattggtggggtttagtatgggaaaggagagttgtttcc 76  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  20351364 ttataggtggggtttagtatgggaatggagagttgtttcc 20351325  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 25970105 - 25970151
Alignment:
Q  41 tggtggggtttagtatgggaaaggagagttgtttcctactatgggaa 87  Q
    ||||||||||||| |||||||||| ||||||||||| || |||||||    
T  25970105 tggtggggtttagcatgggaaaggggagttgtttcccaccatgggaa 25970151  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 231436 - 231481
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcctactatgggaa 87  Q
    |||||||||||||||||||||||  |||||||| |||| |||||||    
T  231436 ggtggggtttagtatgggaaagggaagttgttttctaccatgggaa 231481  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 23383310 - 23383355
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcctactatgggaa 87  Q
    |||||||||||| ||| |||||||||||||||||| || |||||||    
T  23383310 ggtggggtttagaatgagaaaggagagttgtttcccaccatgggaa 23383355  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 39429985 - 39429940
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcctactatgggaa 87  Q
    |||||||||||| ||||||| |||||||||||||| || |||||||    
T  39429985 ggtggggtttagcatgggaatggagagttgtttcccaccatgggaa 39429940  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 6085749 - 6085704
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcctactatgggaa 87  Q
    |||||||||||| |||||||||| |||||||||||||| |||||||    
T  6085749 ggtggggtttagcatgggaaaggtgagttgtttcctaccatgggaa 6085704  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 28975340 - 28975376
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttccta 78  Q
    |||||||||||| ||||||||||||||||||||||||    
T  28975340 ggtggggtttagcatgggaaaggagagttgtttccta 28975376  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 35943887 - 35943845
Alignment:
Q  42 ggtggggtttagtatgggaaaggagagttgtttcctactatgg 84  Q
    |||||||||||| ||||||||||||| |||||||| |||||||    
T  35943887 ggtggggtttagcatgggaaaggagaattgtttcccactatgg 35943845  T

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