View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6016_low_44 (Length: 237)

Name: NF6016_low_44
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6016_low_44
NF6016_low_44
[»] chr1 (5 HSPs)
chr1 (1-218)||(47717680-47717897)
chr1 (1-217)||(47745469-47745685)
chr1 (5-217)||(47712881-47713102)
chr1 (10-217)||(47759801-47760017)
chr1 (10-65)||(47704888-47704943)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 47717680 - 47717897
Alignment:
Q  1 aggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctaaaatagcacgctctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47717680 aggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctctaa 47717779  T
Q  101 acaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaacttacga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47717780 acaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaacttacga 47717879  T
Q  201 cgagaatcacttgatgct 218  Q
    ||||||||||||||||||    
T  47717880 cgagaatcacttgatgct 47717897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 47745469 - 47745685
Alignment:
Q  1 aggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctaaaatagcacgctctaa 100  Q
    ||||||| ||||||| ||||||||| |||||| ||||||||||| |||| |||| |||||||| |||| || | ||| ||||| ||||||||||||||||    
T  47745469 aggaatatatttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttataaaaaaaacttggagtttctgaaatagcacgctctaa 47745568  T
Q  101 acaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaacttacga 200  Q
    ||||||||||||||||||   ||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47745569 acaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaaagttgcattagcggtagcaaacttacga 47745668  T
Q  201 cgagaatcacttgatgc 217  Q
    |||||||||| ||||||    
T  47745669 cgagaatcacctgatgc 47745685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 47712881 - 47713102
Alignment:
Q  5 atagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctaaaatagcacgctctaaacaa 104  Q
    ||||| ||||| ||||||||| ||||||||||||| |||| |||  |||| |||||||| | | ||||| ||||||||| | ||||||  ||||||||||    
T  47712881 atagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaa 47712980  T
Q  105 tcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcattagcggtagcaaact 195  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| |||||||||         |||||||||| | | ||||||||    
T  47712981 tcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaact 47713080  T
Q  196 tacgacgagaatcacttgatgc 217  Q
    || |||||||||||||||||||    
T  47713081 taagacgagaatcacttgatgc 47713102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 47759801 - 47760017
Alignment:
Q  10 tttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctaaaatagcacgctctaaacaatcatt 109  Q
    |||||| ||| ||||| |||||||||||||||||| |||| |||| |||||||||| || || | ||||| ||| | |||||||  |||||||||| |||    
T  47759801 tttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattatt 47759900  T
Q  110 gcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcattagcggtagcaaacttacga 200  Q
    ||||||||||| ||| ||||||||||| ||||| |||||||||||| |||||| |||||||||         |||||||||| | |||||||| ||||||    
T  47759901 gcaatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacga 47760000  T
Q  201 cgagaatcacttgatgc 217  Q
    |||||||||||||||||    
T  47760001 cgagaatcacttgatgc 47760017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 47704888 - 47704943
Alignment:
Q  10 tttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttatta 65  Q
    |||||| ||||||||||||||||||||||| |||| | || |||| ||||||||||    
T  47704888 tttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttatta 47704943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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