View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6016_low_48 (Length: 214)
Name: NF6016_low_48
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_48 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 47522836 - 47523011
Alignment:
| Q |
18 |
gataaagaatcaagttttggtttctggaactactgtgttttgttgtggtagtaacaatgttgtcaaaagagggagtttattttatgatggcatagtttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||| || |||| ||| || ||| ||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
47522836 |
gataaagaatcaagttttggtttcagggactaatgtattctgtcgtggtagaaacaatgttgtcaaaagagggggtttattttctgatggcatagtttgt |
47522935 |
T |
|
| Q |
118 |
gattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggttgtacaagacatagaccatccacta |
193 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47522936 |
gattgttgtcgtgttaatttcaatgtcactggatttgaggctcatgctggttgtacaagacatagaccaaccacta |
47523011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 47528346 - 47528520
Alignment:
| Q |
18 |
gataaagaatcaagttttggtttctggaactactgtgttttgttgtggtagtaacaatgttgtcaaaagagggagtttattttatgatggcatagtttgt |
117 |
Q |
| |
|
|||||||||| ||||||||||||| || |||| |||| | ||| ||||||||||||||||||| | ||| |||||| ||| || |||||| || |||||| |
|
|
| T |
47528346 |
gataaagaataaagttttggtttcagggactaatgtgctctgtcgtggtagtaacaatgttgttacaagcgggagtatatattgtgatggtattgtttgt |
47528445 |
T |
|
| Q |
118 |
gattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggttgtacaagacatagaccatccact |
192 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||| ||| |||||||||||||||||||| || | |||||||| |
|
|
| T |
47528446 |
gattgttgtaatgttaatttcactctcgctggatttaaggatcatgctggttgtacaagacctacatcatccact |
47528520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 47550116 - 47550197
Alignment:
| Q |
109 |
atagtttgtgattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggttgtacaagacatagaccatcca |
190 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||| |||| |||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
47550116 |
atagcttgtgattgttgtcaggttaaattcactctcaccaaatttgaggctcatgcttgttgtacaaaacctagaccatcca |
47550197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 44871443 - 44871271
Alignment:
| Q |
18 |
gataaagaatcaagttttggtttctggaactactgtgttttgttgtggtagtaacaatgttgtcaaaagagggagtttattttatgatggcatagtttgt |
117 |
Q |
| |
|
|||| ||||| ||||||||||||| |||||| |||||| ||| |||||||| | ||| ||||||||||||||||| |||||| |||||| ||||||||| |
|
|
| T |
44871443 |
gatagagaataaagttttggtttcaggaactcatgtgttctgtcgtggtagtgaaaatattgtcaaaagagggagtatattttctgatggtatagtttgt |
44871344 |
T |
|
| Q |
118 |
gattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggttgtacaagacatagaccatcca |
190 |
Q |
| |
|
| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44871343 |
aactgttgtcgtgttaatttcaccgtcagtggatttgaggctcatgctggttgtacaagacacagaccatcca |
44871271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 9820635 - 9820460
Alignment:
| Q |
18 |
gataaagaatcaagttttggtttctggaactactgtgttttgttgtggtagtaacaatgttgtcaaaagagggagtttattttatgatggcatagtttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||| || |||| |||||| ||| || |||||||| |||||||||||||| ||||| |||| ||||| ||||||||| |
|
|
| T |
9820635 |
gataaagaatcaagttttggtttcagggactaatgtgttctgtcagggcagtaacaaagttgtcaaaagaggaagtttgttttctgatgctatagtttgt |
9820536 |
T |
|
| Q |
118 |
gattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggttgtacaagacatagaccatccacta |
193 |
Q |
| |
|
|||||||||| ||||| || |||||||| || || ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9820535 |
gattgttgtcatgttacctttactatcaccgggttcgagtctcatgctggttgtacaagacatagaccatccacta |
9820460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 9853345 - 9853520
Alignment:
| Q |
18 |
gataaagaatcaagttttggtttctggaactactgtgttttgttgtggtagtaacaatgttgtcaaaagagggagtttattttatgatggcatagtttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||| || |||| |||||| ||| || |||||||| |||||||||||||| ||||| |||| ||||| ||||||||| |
|
|
| T |
9853345 |
gataaagaatcaagttttggtttcagggactaatgtgttctgtcagggcagtaacaaagttgtcaaaagaggaagtttgttttctgatgctatagtttgt |
9853444 |
T |
|
| Q |
118 |
gattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggttgtacaagacatagaccatccacta |
193 |
Q |
| |
|
|||||||||| ||||| || |||||||| || || ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9853445 |
gattgttgtcatgttacctttactatcaccgggttcgagtctcatgctggttgtacaagacatagaccatccacta |
9853520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 20683315 - 20683194
Alignment:
| Q |
69 |
taacaatgttgtcaaaagagggagtttattttatgatggcatagtttgtgattgttgtcgtgttaatttcactatcactggatttgaggctcatgctggt |
168 |
Q |
| |
|
|||||||||| |||||||||| ||| ||| || ||| | |||| |||||||||||||| |||||| |||||| |||| ||| || ||||||||| | |
|
|
| T |
20683315 |
taacaatgttatcaaaagaggaagtatatcttctgaatgtatagcttgtgattgttgtcatgttaaattcactctcaccatattcgatgctcatgcttct |
20683216 |
T |
|
| Q |
169 |
tgtacaagacatagaccatcca |
190 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20683215 |
tgtacaagacatagaccatcca |
20683194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University