View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6016_low_6 (Length: 632)
Name: NF6016_low_6
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 13 - 543
Target Start/End: Original strand, 6170093 - 6170622
Alignment:
| Q |
13 |
catcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaataacattgctaattgaaacaatttatcaaat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6170093 |
catcaccaacaacaatctcaaagatcgatatcttttggcagttaccacttcgaacttaatcattttga-taacattgctaattgaaacaatttatcaaat |
6170191 |
T |
|
| Q |
113 |
tgtctgtgtttataattaatttggtagggagtatatttgaatagaaaataaaaacatgataggtgtttataatcaaggacaaagggagtaattatcnnnn |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170192 |
tgtctgtgtttataattaatttggtagggagtatatttgaatagaaaataaaaacatgataggtgtttataatcaaggacaaagggagtaattatctttt |
6170291 |
T |
|
| Q |
213 |
nnncttcatttgtaatgaaattgatcttaattgatttgtttcttcgaataggatcaaagattaaaattaatttatgagatatagaattggttccaggatg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170292 |
tttcttcatttgtaatgaaattgatcttaattgatttgtttcttcgaataggatcaaagattaaaattaatttatgagatatagaattggttccaggatg |
6170391 |
T |
|
| Q |
313 |
acataaaattgattccattgataaaaaattgatgtggatattttttaatgtgttcctattttattagcttatgtttgtattgttatttgatagtggattt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6170392 |
acataaaattgattccattgataaaaaattgatgtggatattttttaatgtgttcctattttattagcctatgtttgtattgttatttgatagtggattt |
6170491 |
T |
|
| Q |
413 |
gttgtgtcctacaatttgtagcttctctattatcaatttccaaagctatcaaacgtgtggtgaaacgccaaaacaaacacaaacttagttaagttgttgg |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170492 |
gttgtgtcctacaatttgtagcttctctattatcaatttccaaagctatcaaacatgtggtgaaacgccaaaacaaacacaaacttagttaagttgttgg |
6170591 |
T |
|
| Q |
513 |
gagttcagacacaagttgtgacagcttggtg |
543 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
6170592 |
gagttcagacacaagttgtgacagcttggtg |
6170622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 6187039 - 6187142
Alignment:
| Q |
13 |
catcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaataacattgctaa-ttgaaacaatttatcaaa |
111 |
Q |
| |
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|||||||||||||||| ||||| || |||| |||| | || |||||||||||| ||||| ||||||| ||||||||| |||| ||||||||||||| |
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| T |
6187039 |
catcaccaacaacaatatcaaatatagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgagacaatttatcaaa |
6187138 |
T |
|
| Q |
112 |
ttgt |
115 |
Q |
| |
|
|||| |
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|
| T |
6187139 |
ttgt |
6187142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 466
Target Start/End: Original strand, 47336509 - 47336553
Alignment:
| Q |
422 |
tacaatttgtagcttctctattatcaatttccaaagctatcaaac |
466 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
47336509 |
tacaatttgtagcttctctattatcaatttccaaggctctcaaac |
47336553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 419 - 467
Target Start/End: Original strand, 22179177 - 22179225
Alignment:
| Q |
419 |
tcctacaatttgtagcttctctattatcaatttccaaagctatcaaacg |
467 |
Q |
| |
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||||||||||||| |||||||||||||||||| ||| ||| ||||||| |
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|
| T |
22179177 |
tcctacaatttgtggcttctctattatcaattctcaaggctctcaaacg |
22179225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 4243983 - 4244086
Alignment:
| Q |
13 |
catcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaataacattgct-aattgaaacaatttatcaaa |
111 |
Q |
| |
|
|||||||||||||||| || || || |||| |||||| ||| ||||| ||||| ||||| |||||||| ||||||| | |||| ||||||||||||| |
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| T |
4243983 |
catcaccaacaacaatatcgaatattgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaa |
4244082 |
T |
|
| Q |
112 |
ttgt |
115 |
Q |
| |
|
|||| |
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|
| T |
4244083 |
ttgt |
4244086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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