View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6016_low_7 (Length: 532)
Name: NF6016_low_7
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6016_low_7 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 285 - 525
Target Start/End: Complemental strand, 2620351 - 2620111
Alignment:
| Q |
285 |
caaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcat |
384 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2620351 |
caaaagcaatcaacactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcat |
2620252 |
T |
|
| Q |
385 |
atgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccactt |
484 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2620251 |
atgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagccactt |
2620152 |
T |
|
| Q |
485 |
aagttgaaacttatgaatagcaactccatcaagaataatct |
525 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2620151 |
aagttgcaacttatgaatagcaactccatcaagaagaatct |
2620111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 282 - 525
Target Start/End: Complemental strand, 2433079 - 2432836
Alignment:
| Q |
282 |
tgacaaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttctt |
381 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2433079 |
tgacaaaagtaattaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttggcagcatccacaatttctt |
2432980 |
T |
|
| Q |
382 |
catatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagcca |
481 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2432979 |
catatgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagcca |
2432880 |
T |
|
| Q |
482 |
cttaagttgaaacttatgaatagcaactccatcaagaataatct |
525 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
2432879 |
cttaagttgcaacttatgaatagcaactccatcaagaagaatct |
2432836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 282 - 525
Target Start/End: Original strand, 2677230 - 2677473
Alignment:
| Q |
282 |
tgacaaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttctt |
381 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
2677230 |
tgacaaaagtaattaacactaacctgagtatcatatccttgtggcaacattgaaatgaaattatgagcattagaagctttagcagcatccacgatttctt |
2677329 |
T |
|
| Q |
382 |
catatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagcca |
481 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
2677330 |
catatgtagcatcctctcttccaaaaagtatattctccataatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagcca |
2677429 |
T |
|
| Q |
482 |
cttaagttgaaacttatgaatagcaactccatcaagaataatct |
525 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2677430 |
cttaagttgcaacttatgaatagcaactccatcaagaagaatct |
2677473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 298 - 525
Target Start/End: Original strand, 2572410 - 2572637
Alignment:
| Q |
298 |
cactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctc |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
2572410 |
cactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcatcctc |
2572509 |
T |
|
| Q |
398 |
tcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccacttaagttgaaactta |
497 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
2572510 |
tcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaagccacttaagttgcaactta |
2572609 |
T |
|
| Q |
498 |
tgaatagcaactccatcaagaataatct |
525 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
2572610 |
tgaatagcaactccatcaagaagaatct |
2572637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 278 - 525
Target Start/End: Complemental strand, 2586668 - 2586421
Alignment:
| Q |
278 |
atattgacaaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatt |
377 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
2586668 |
atatttacaaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgaaatgaaattatgagcattagaagctttagcagcatccacaaca |
2586569 |
T |
|
| Q |
378 |
tcttcatatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaa |
477 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
2586568 |
tcttcaaatgtagcatcctctcttccaaaaagtatattctccttgatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaa |
2586469 |
T |
|
| Q |
478 |
gccacttaagttgaaacttatgaatagcaactccatcaagaataatct |
525 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2586468 |
gccacttaagttgcaacttatgaatagcaactccatcaagaagaatct |
2586421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 298 - 525
Target Start/End: Complemental strand, 2448930 - 2448703
Alignment:
| Q |
298 |
cactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctc |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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|
| T |
2448930 |
cactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaacatcttcatatgtagcatcctc |
2448831 |
T |
|
| Q |
398 |
tcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccacttaagttgaaactta |
497 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
2448830 |
tcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagccacttaagttgcaactta |
2448731 |
T |
|
| Q |
498 |
tgaatagcaactccatcaagaataatct |
525 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
2448730 |
tgaatagcaactccatcaagaagaatct |
2448703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 299 - 525
Target Start/End: Original strand, 2599989 - 2600215
Alignment:
| Q |
299 |
actaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctct |
398 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
2599989 |
actaacctgagtatcatatacttgtggcaacaatgaaatgaaattatgagcattagaagttttagcagcattcacaatttcttcatatgtagcatcctct |
2600088 |
T |
|
| Q |
399 |
cttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccacttaagttgaaacttat |
498 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
2600089 |
cttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagccacttaagttgcaacttat |
2600188 |
T |
|
| Q |
499 |
gaatagcaactccatcaagaataatct |
525 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
2600189 |
gaatagcaactccatcaagaagaatct |
2600215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 298 - 525
Target Start/End: Original strand, 2644808 - 2645035
Alignment:
| Q |
298 |
cactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctc |
397 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||| |
|
|
| T |
2644808 |
cactaacctgcgtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaaactttagcagcatctacaacatcttcatatgtagcatcctc |
2644907 |
T |
|
| Q |
398 |
tcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccacttaagttgaaactta |
497 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
2644908 |
tcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccactgaagttgcaactta |
2645007 |
T |
|
| Q |
498 |
tgaatagcaactccatcaagaataatct |
525 |
Q |
| |
|
||||| |||||||||||||||| ||||| |
|
|
| T |
2645008 |
tgaatggcaactccatcaagaagaatct |
2645035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 2599483 - 2599624
Alignment:
| Q |
18 |
acattttggtattaattattgtctcagccatcaagtaggcataaaatattttaaatgtgaataagtaatatgagaaaggatgagaatattctttgcataa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2599483 |
acattttggtattaattattgtctcagccatcaagtaggcataaaatattttaaatgtgaataagcaatatgagaaaggatgagaatattctttgcataa |
2599582 |
T |
|
| Q |
118 |
aaatcatggaagaccattgtgcaacttgcacatgatgacatg |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2599583 |
aaatcatggaagaccattgtgcaacttgcacatgatgacatg |
2599624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 402 - 518
Target Start/End: Original strand, 17872688 - 17872804
Alignment:
| Q |
402 |
ccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccacttaagttgaaacttatgaa |
501 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||| || || ||||| ||||||||||| |||| || || ||| ||| |
|
|
| T |
17872688 |
ccaaaaattatattctctttaatgcttgttgcaaataaagcaggttcttgactaaccaaccccatcattgacctaagccatttaatctgcaagttacgaa |
17872787 |
T |
|
| Q |
502 |
tagcaactccatcaaga |
518 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
17872788 |
tagctactccatcaaga |
17872804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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