View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6016_low_9 (Length: 509)

Name: NF6016_low_9
Description: NF6016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6016_low_9
NF6016_low_9
[»] chr5 (8 HSPs)
chr5 (13-492)||(29712542-29713021)
chr5 (76-306)||(29687640-29687870)
chr5 (56-297)||(29695721-29695962)
chr5 (101-170)||(42562726-42562795)
chr5 (345-435)||(29696064-29696154)
chr5 (352-421)||(42562478-42562547)
chr5 (105-167)||(1812043-1812105)
chr5 (106-167)||(178638-178699)
[»] chr1 (5 HSPs)
chr1 (106-204)||(24309796-24309894)
chr1 (92-167)||(24322067-24322142)
chr1 (105-230)||(24340032-24340157)
chr1 (106-164)||(24415456-24415514)
chr1 (119-167)||(24366787-24366835)
[»] chr8 (5 HSPs)
chr8 (105-228)||(15348480-15348603)
chr8 (82-168)||(12199902-12199988)
chr8 (82-168)||(12444330-12444416)
chr8 (82-168)||(12194896-12194982)
chr8 (82-168)||(12439324-12439410)
[»] chr4 (36 HSPs)
chr4 (88-203)||(48156789-48156904)
chr4 (105-216)||(48862859-48862973)
chr4 (109-228)||(7774166-7774285)
chr4 (105-230)||(48735647-48735775)
chr4 (111-228)||(7877344-7877461)
chr4 (112-200)||(7904657-7904745)
chr4 (91-201)||(45366582-45366695)
chr4 (89-200)||(48148047-48148161)
chr4 (88-203)||(45372419-45372534)
chr4 (112-195)||(49044599-49044682)
chr4 (109-201)||(7771026-7771118)
chr4 (111-171)||(49048993-49049053)
chr4 (109-203)||(7907947-7908041)
chr4 (106-168)||(33134223-33134285)
chr4 (105-203)||(48891027-48891125)
chr4 (105-202)||(7765239-7765336)
chr4 (107-167)||(48870162-48870222)
chr4 (107-167)||(48885848-48885908)
chr4 (109-168)||(7813102-7813161)
chr4 (109-168)||(7822591-7822650)
chr4 (112-203)||(49041500-49041591)
chr4 (109-201)||(7789711-7789803)
chr4 (112-199)||(7238086-7238173)
chr4 (109-168)||(7800259-7800318)
chr4 (113-168)||(33133663-33133718)
chr4 (105-216)||(48170935-48171049)
chr4 (115-200)||(48875474-48875559)
chr4 (112-208)||(37827351-37827447)
chr4 (107-170)||(48898342-48898405)
chr4 (109-164)||(48902572-48902627)
chr4 (347-384)||(7771261-7771298)
chr4 (109-202)||(7786065-7786158)
chr4 (347-384)||(7904890-7904927)
chr4 (352-384)||(7774010-7774042)
chr4 (352-384)||(7789951-7789983)
chr4 (347-435)||(48875700-48875788)
[»] scaffold0508 (1 HSPs)
scaffold0508 (105-204)||(11880-11979)
[»] chr6 (1 HSPs)
chr6 (105-207)||(21015394-21015496)
[»] chr3 (4 HSPs)
chr3 (105-168)||(11024934-11024997)
chr3 (109-435)||(47452040-47452363)
chr3 (109-168)||(11006359-11006418)
chr3 (105-168)||(11015922-11015985)


Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 13 - 492
Target Start/End: Complemental strand, 29713021 - 29712542
Alignment:
Q  13 aatattggcaaaggaggaaacgtgtgaatggagacgatgaagaagacagagcaatatctatctattgagttaatcattcaaatccttttaatgttaccgg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29713021 aatattggcaaaggaggaaacgtgtgaatggagacgatgaagaagacagagcaatatctatctattgagttaatcattcaaatccttttaatgttaccgg 29712922  T
Q  113 tgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgccaaaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29712921 tgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttaccgccaaaac 29712822  T
Q  213 acacgctcctagaattctattgataactccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattcattgaat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712821 acacgctcctagaattctattgataactccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattcattgaat 29712722  T
Q  313 attaattttttgcttccacagtcttttacacaacttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatgga 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712721 attaattttttgcttccacagtcttttacacaacttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatgga 29712622  T
Q  413 atccatccactggagttcacaaatatataccaaactctcttattgattgcaatttagatgcatatcatttatatggtttt 492  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29712621 atccatccactggagttcacaaatatataccaaattctcttattgattgcaatttagatgcatatcatttatatggtttt 29712542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 76 - 306
Target Start/End: Original strand, 29687640 - 29687870
Alignment:
Q  76 attgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctg 175  Q
    ||||| || ||||||||||||||| ||| |||||| |||||||||||||| || |||||||| ||||||||||  ||||||||||| || |||||| ||     
T  29687640 attgaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctc 29687739  T
Q  176 atttcgcaaattcacattttcaacttactgccaaaacacacgctcctagaattctattgataactccaaatctggaatctctatctattgatttggaaac 275  Q
    | || |||||||| |||||||||||||| |||||  ||||| ||||||||||||| || |||| |||| |||| |||||||||||||| ||||| |||||    
T  29687740 actttgcaaattctcattttcaacttaccgccaatgcacacactcctagaattctgttcataaatccagatcttgaatctctatctatagattttgaaac 29687839  T
Q  276 atcactctacgatgatagtgcttcctattca 306  Q
    ||| ||  |||||||||||||||| ||||||    
T  29687840 atcgcttcacgatgatagtgcttcttattca 29687870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 56 - 297
Target Start/End: Original strand, 29695721 - 29695962
Alignment:
Q  56 agacagagcaatatctatctattgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggtt 155  Q
    ||||||||  ||||||  || |||||||||||||||||||||| |||| |||||| || |||||||||||||||||||| ||||||||||||||||||||    
T  29695721 agacagagacatatcttccttttgagttaatcattcaaatcctattaaggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggtt 29695820  T
Q  156 ttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgccaaaacacacgctcctagaattctattgataactccaaatctggaatct 255  Q
     |||||||| |||||| || | || |||||||||||||||||||||||  ||   |||||| |   ||||||| | |||||||||||| ||||  |||||    
T  29695821 atctcttatatctcaacctcactttgcaaattcacattttcaacttaccaccgctacacacacgaatagaattatgttgataactccatatcttcaatct 29695920  T
Q  256 ctatctattgatttggaaacatcactctacgatgatagtgct 297  Q
    |||||||| ||| | |||  ||| ||  ||||||||||||||    
T  29695921 ctatctatagatcttgaattatcgcttaacgatgatagtgct 29695962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 42562795 - 42562726
Alignment:
Q  101 taatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca 170  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||  ||||||||||| ||||||||    
T  42562795 taatgttaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctctaatctctca 42562726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 435
Target Start/End: Original strand, 29696064 - 29696154
Alignment:
Q  345 acttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaa 435  Q
    ||||||| ||||||||||||||||||| |||||||||||||  |||   ||| | |||||| |||||||||||||||| ||| ||||||||    
T  29696064 acttgattttaaaggttcgtgtagaggctttatacttttgaactgttactcaagcctctgtatatggaatccatccaccggatttcacaaa 29696154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 42562547 - 42562478
Alignment:
Q  352 attaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatcca 421  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||  |||  ||||||||||||||||    
T  42562547 attaaaggttcgtgtagagggtttatacttttgcattgtggtgcatgcttctacctatggaatccatcca 42562478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 1812043 - 1812105
Alignment:
Q  105 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 167  Q
    |||||| ||||||| ||| || |||| ||| || |||||||||||||||||||||||||||||    
T  1812043 gttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 178638 - 178699
Alignment:
Q  106 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 167  Q
    ||||| || |||||||||||||||||||| || ||||||||||  ||||| ||||| |||||    
T  178638 ttaccagttaagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctc 178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 24309796 - 24309894
Alignment:
Q  106 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 204  Q
    |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| | ||| | || ||||||||||||||||||||||||    
T  24309796 ttaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctgattctcactttgcaaattcacattttcaacttact 24309894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 24322067 - 24322142
Alignment:
Q  92 aaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 167  Q
    |||||||| ||| ||| | |||||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  24322067 aaatccttctaaggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 24340032 - 24340157
Alignment:
Q  105 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 204  Q
    ||||||||| |||||||||||||||||||| |  |||||||||| ||||||||| ||||||||| |   | | || ||||||||||| |||||| |||||    
T  24340032 gttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctgataatcactttgcaaattcacactttcaagttact 24340131  T
Q  205 gccaaaacacacgctcctagaattct 230  Q
    ||   ||||||| ||| |||||||||    
T  24340132 gctgcaacacacactcttagaattct 24340157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 24415456 - 24415514
Alignment:
Q  106 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttat 164  Q
    |||||||| |||||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  24415456 ttaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 24366787 - 24366835
Alignment:
Q  119 ctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 167  Q
    |||| ||||||||||| || ||||| |||| ||||||||||||||||||    
T  24366787 ctctgattcgtttcaaatgtgtttgcaagtcatggttttctcttatctc 24366835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 15348480 - 15348603
Alignment:
Q  105 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 204  Q
    ||||||||||||||||||||| |||||||| |||||||||||||  |||||||||||||||||| |  || | ||||||||||||||||||||| ||||     
T  15348480 gttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattacc 15348579  T
Q  205 gccaaaacacacgctcctagaatt 228  Q
    |||  ||||||| ||| |||||||    
T  15348580 gccgcaacacacactcgtagaatt 15348603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 12199902 - 12199988
Alignment:
Q  82 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 168  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| || |||||||||| |||||||||||||||||||    
T  12199902 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 12199988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 12444330 - 12444416
Alignment:
Q  82 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 168  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| || |||||||||| |||||||||||||||||||    
T  12444330 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 12444416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 12194896 - 12194982
Alignment:
Q  82 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 168  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| ||| ||||||||| |||||| ||||||||||||    
T  12194896 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctct 12194982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 12439324 - 12439410
Alignment:
Q  82 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 168  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| ||| ||||||||| |||||| ||||||||||||    
T  12439324 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctct 12439410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 48156904 - 48156789
Alignment:
Q  88 attcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaatt 187  Q
    |||||||||||||||  ||||||||||||||||||| | ||||||||||||||||||||||  |||||||||||||||||  |  || |||| |||||||    
T  48156904 attcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctccgatactcattttgcaaatt 48156805  T
Q  188 cacattttcaacttac 203  Q
    | ||||||||| ||||    
T  48156804 ctcattttcaaattac 48156789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 48862859 - 48862973
Alignment:
Q  105 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca--at-ctgatttcgcaaattcacattttcaactt 201  Q
    |||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||  || || | || |||||||||||||||||||||    
T  48862859 gttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctcatgatcctcactttgcaaattcacattttcaactt 48862958  T
Q  202 actgccaaaacacac 216  Q
    ||||||  |||||||    
T  48862959 actgccgcaacacac 48862973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 7774285 - 7774166
Alignment:
Q  109 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgcca 208  Q
    ||||||||||||||||||| |||||| || ||||||||| |||||||||||||||||||| |  |  |||| |||||||||||||||||||| ||  |||    
T  7774285 ccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatctctgatccccattttgcaaattcacattttcaactcaccacca 7774186  T
Q  209 aaacacacgctcctagaatt 228  Q
     ||| ||| |||||||||||    
T  7774185 caacgcacactcctagaatt 7774166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 48735775 - 48735647
Alignment:
Q  105 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc---tcaatctgatttcgcaaattcacattttcaactt 201  Q
    |||||||||||||||||||||||||||||| || ||||||||||  |||||||||||||||||   | |  ||||||| ||||||||||||||| || ||    
T  48735775 gttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctcctgtgatactgattttgcaaattcacattttgaaatt 48735676  T
Q  202 actgccaaaacacacgctcctagaattct 230  Q
    || |||| ||| ||| ||| |||||||||    
T  48735675 accgccataacccacactcgtagaattct 48735647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 7877344 - 7877461
Alignment:
Q  111 ggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgccaaa 210  Q
    ||||||||||||||| |||||||| ||| |||||||| |||||||||||||||||||| |  |  |||| |||||||||||||||||||| ||  ||| |    
T  7877344 ggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctgatcccaattttgcaaattcacattttcaactcaccaccaca 7877443  T
Q  211 acacacgctcctagaatt 228  Q
    || ||| |||||||||||    
T  7877444 acgcacactcctagaatt 7877461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 7904657 - 7904745
Alignment:
Q  112 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaact 200  Q
    |||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |  || | || ||||||||||||||||||||    
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatcctcactttgcaaattcacattttcaact 7904745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 45366695 - 45366582
Alignment:
Q  91 caaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctc---aatctgatttcgcaaatt 187  Q
    ||||||||  ||| |||||| |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||   | ||  | || |||||||    
T  45366695 caaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctctcgtgattcacactttgcaaatt 45366596  T
Q  188 cacattttcaactt 201  Q
    ||||||||||||||    
T  45366595 cacattttcaactt 45366582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 48148161 - 48148047
Alignment:
Q  89 ttcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca--at-ctgatttcgcaaa 185  Q
    |||||||||||| || |||||| ||||||||||||||||||||||| || || |||||||  ||||||||||||||||||||  || || | ||||||||    
T  48148161 ttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctctcatgatcctcacttcgcaaa 48148062  T
Q  186 ttcacattttcaact 200  Q
    |||||||||| ||||    
T  48148061 ttcacattttgaact 48148047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 45372534 - 45372419
Alignment:
Q  88 attcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaatt 187  Q
    |||||||| ||  ||| ||| ||||||||||||||||| |||||||| || ||||||||||  ||||||||| |||||||| |  || |||| |||||||    
T  45372534 attcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcctcattttgcaaatt 45372435  T
Q  188 cacattttcaacttac 203  Q
    ||||||||||| ||||    
T  45372434 cacattttcaaattac 45372419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 49044682 - 49044599
Alignment:
Q  112 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacatttt 195  Q
    |||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| |  | || |||||||||||||||    
T  49044682 gtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaattcacatttt 49044599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 7771026 - 7771118
Alignment:
Q  109 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactt 201  Q
    |||||||||||||||||  ||||||| |||||||||||||  |||||||||||||||||| |  || | || | |||||||||||||||||||    
T  7771026 ccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcctcactttgaaaattcacattttcaactt 7771118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 49049053 - 49048993
Alignment:
Q  111 ggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaa 171  Q
    ||||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  49049053 ggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaa 49048993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 7907947 - 7908041
Alignment:
Q  109 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttac 203  Q
    ||||||||||||||||  ||||||||||  ||| |||||| |||||||||||||||||||    |  |||| |||||||||||||||||||||||    
T  7907947 ccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaacttac 7908041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 33134285 - 33134223
Alignment:
Q  106 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 168  Q
    ||||||||||||||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  33134285 ttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctct 33134223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 48891027 - 48891125
Alignment:
Q  105 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttac 203  Q
    |||| |||| ||||||||||| |||||||| |||||||||||||  |||||||||||| ||||  |  || |||| |||||||| ||||||||||||||    
T  48891027 gttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttac 48891125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 7765239 - 7765336
Alignment:
Q  105 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactta 202  Q
    ||||||||||||||||||  |   |||||||||| |||||||||||||||||||| |||||||| |  || | || |||||||||||||| |||||||    
T  7765239 gttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcactttgcaaattcacatttccaactta 7765336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 48870162 - 48870222
Alignment:
Q  107 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 167  Q
    |||||||||| ||||||||||||||||| |||||||||||||  ||||||| |||||||||    
T  48870162 taccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48870222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 48885848 - 48885908
Alignment:
Q  107 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 167  Q
    |||||||||| ||||||||||||||||| |||||||||||||  ||||||| |||||||||    
T  48885848 taccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48885908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 7813102 - 7813161
Alignment:
Q  109 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 168  Q
    |||||||||| |||||| ||||||||||| |||||||| | |||||||||||||||||||    
T  7813102 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctct 7813161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 7822591 - 7822650
Alignment:
Q  109 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 168  Q
    |||||||||| |||||| ||||||||||| |||||||| | |||||||||||||||||||    
T  7822591 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctct 7822650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 49041591 - 49041500
Alignment:
Q  112 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttac 203  Q
    ||||||||||||||| ||||||| |||||||| ||||  |||||||||||||||||| |  |  |||| |||||||| |||||| |||||||    
T  49041591 gtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctgatccccattttgcaaattctcatttttaacttac 49041500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 7789711 - 7789803
Alignment:
Q  109 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactt 201  Q
    |||||||||||||||||  ||||||| |||||||||||||  ||||||||| |||||||  |  || | || | |||||||||||||||||||    
T  7789711 ccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctccgatcctcactttgaaaattcacattttcaactt 7789803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 7238173 - 7238086
Alignment:
Q  112 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaac 199  Q
    ||||||||||||||  ||||||| || ||||||||||  |||||||||||||||||| |  || | || |||||||||||||| ||||    
T  7238173 gtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctctgaccctcactttgcaaattcacatttccaac 7238086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 7800259 - 7800318
Alignment:
Q  109 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 168  Q
    |||||||||| |||||| ||||||||||| |||||||| | ||||||||||||| |||||    
T  7800259 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctct 7800318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 33133663 - 33133718
Alignment:
Q  113 tgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 168  Q
    |||||||||||||||||||||| | | |||||||| | ||||||||||||||||||    
T  33133663 tgaagtctcttattcgtttcaaattcatttgtaagctttggttttctcttatctct 33133718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 48171049 - 48170935
Alignment:
Q  105 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca--at-ctgatttcgcaaattcacattttcaactt 201  Q
    |||| |||||||||||||| | |||||||| || ||||||||||  |||||| |||||||||||||  || || | || |||||||| ||||||||| ||    
T  48171049 gttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctctcatgatcctcactttgcaaattcgcattttcaaatt 48170950  T
Q  202 actgccaaaacacac 216  Q
    || ||| ||||||||    
T  48170949 accgcctaaacacac 48170935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 48875474 - 48875559
Alignment:
Q  115 aagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaact 200  Q
    |||||||| ||||||||||| |||||||| ||||  ||||||||||| |||||  || |  ||||  |||||||||||||||||||    
T  48875474 aagtctctaattcgtttcaaatgcgtttgcaagtcttggttttctctcatctccgaaccccattttacaaattcacattttcaact 48875559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 37827447 - 37827351
Alignment:
Q  112 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgcca 208  Q
    ||||||||||||||  |||| |  ||||||||||||| ||||||  ||||||| ||| |  | || || ||||||||||||||||||||||| ||||    
T  37827447 gtgaagtctcttataagttttacatgcgtttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttacggcca 37827351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 48898342 - 48898405
Alignment:
Q  107 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca 170  Q
    |||| |||||||||||||  ||||||||||| ||||||||||  ||||| || |||||||||||    
T  48898342 tacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctca 48898405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 48902572 - 48902627
Alignment:
Q  109 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttat 164  Q
    ||||| |||||||| ||||||||||| || ||||||||||  ||||||||||||||    
T  48902572 ccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttat 48902627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 7771261 - 7771298
Alignment:
Q  347 ttgatattaaaggttcgtgtagagggtttatacttttg 384  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7771261 ttgaaattagaggttcgtgtagagggtttatacttttg 7771298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 7786065 - 7786158
Alignment:
Q  109 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactta 202  Q
    |||||||| ||||||||    ||||| |||||||||||| ||||| ||||| |||||||| |  || | || |||||||||||||| |||||||    
T  7786065 ccggtgaaatctcttatattgttcaaatgcgtttgtaagctatggatttctattatctctgatcctcaatttgcaaattcacatttccaactta 7786158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 7904890 - 7904927
Alignment:
Q  347 ttgatattaaaggttcgtgtagagggtttatacttttg 384  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7904890 ttgaaattagaggttcgtgtagagggtttatacttttg 7904927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 7774042 - 7774010
Alignment:
Q  352 attaaaggttcgtgtagagggtttatacttttg 384  Q
    |||| ||||||||||||||||||||||||||||    
T  7774042 attagaggttcgtgtagagggtttatacttttg 7774010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 7789951 - 7789983
Alignment:
Q  352 attaaaggttcgtgtagagggtttatacttttg 384  Q
    |||| ||||||||||||||||||||||||||||    
T  7789951 attagaggttcgtgtagagggtttatacttttg 7789983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 48875700 - 48875788
Alignment:
Q  347 ttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaa 435  Q
    |||| ||||||||||| || ||||| |||||||| |||  ||||  |||| | ||||  ||||||||||||||||| ||| ||||||||    
T  48875700 ttgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcacaaa 48875788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 11880 - 11979
Alignment:
Q  105 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 204  Q
    ||||||| | ||||||||||| |||||||| | ||||||||||| ||||||||||||||||||| |   | | || ||||||||||||||||||||||||    
T  11880 gttaccgattaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaacttact 11979  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 207
Target Start/End: Original strand, 21015394 - 21015496
Alignment:
Q  105 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 204  Q
    ||||||||| | ||||||| | ||||||||||| ||||||||||||| ||||||||||||||||||| |  | || |||| |||||||||| || |||||    
T  21015394 gttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctctcaaacccactttgcaatttcacattttgaaattact 21015493  T
Q  205 gcc 207  Q
    |||    
T  21015494 gcc 21015496  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 11024997 - 11024934
Alignment:
Q  105 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 168  Q
    |||||||||||||||||| || |||||||| ||||||||||||| ||||||  |||||||||||    
T  11024997 gttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctct 11024934  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 435
Target Start/End: Complemental strand, 47452363 - 47452040
Alignment:
Q  109 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgcca 208  Q
    ||||||||||||||| | || ||||||||| ||| ||||| ||||||||||||||||||| |  ||   || |||||  |||||||| ||||||| |||     
T  47452363 ccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctctttgcaaaaacacattttgaacttaccgcc- 47452265  T
Q  209 aaacacacgctcctagaattctattgataactccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattcatt 308  Q
       ||||| ||| ||||||| | || |||||  |||  || ||   || ||| || ||||| ||| | |||||  | ||||||||||||||   ||||      
T  47452264 --gcacacactcgtagaattgtgtttataacatcaacccttgacgttcgatcaatagatttagaagcgtcacttaatgatgatagtgcttctacttcacc 47452167  T
Q  309 gaatattaattttttgcttccacagtct-tttacacaacttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtct 407  Q
    |||  |||||||||||||||| || |||   || | | ||||| ||||||||||| |||||||||||||||||||| ||||||  ||||    |||   |    
T  47452166 gaaccttaattttttgcttccccaatctgagtata-atcttgaaattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacat 47452068  T
Q  408 atggaatccatccactggagttcacaaa 435  Q
    ||||||||||||||||||||||||||||    
T  47452067 atggaatccatccactggagttcacaaa 47452040  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 11006418 - 11006359
Alignment:
Q  109 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 168  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||||||  |||||||||||    
T  11006418 ccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 11006359  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 11015985 - 11015922
Alignment:
Q  105 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 168  Q
    |||||||||||||||||| || |||||||| ||||||||||||| || |||  |||||||||||    
T  11015985 gttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatctct 11015922  T

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