View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6017_high_3 (Length: 397)
Name: NF6017_high_3
Description: NF6017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6017_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 336
Target Start/End: Complemental strand, 40210918 - 40210593
Alignment:
| Q |
10 |
attattctcaactgctattgatcaggcttgtgattggttggtgctttaagaacatgtacgaatcgtagaaaataagtaatcaatattatattgtggatgt |
109 |
Q |
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| T |
40210918 |
attattctcaactgctattgatcaggcttgtgattggttggtgctttaagaacatgtacgaatcgtagaaaataagtaatcaatattatattgtggatgt |
40210819 |
T |
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| Q |
110 |
aagtgtgaacgcatgaccaaatcgtttttaagttataacttactataatgtaaggatcttcggtactcgaggatattaaaaactttactacaaaagaaga |
209 |
Q |
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| T |
40210818 |
aagtgtgaacgcatgaccaaatcgtttttaagttataacttactataatgta-ggatcttcggtgctcgaggatattaaaaactttactacaaaagaaga |
40210720 |
T |
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| Q |
210 |
atttaaaaagtatagtaatatatttgtatttttgacaaggagtagtaaatatttgttgttgtcccccatcttgtagaatttatgccacacaatttaacga |
309 |
Q |
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| T |
40210719 |
atttataaagtatagtaatatatttgtatttttgacaaggagtagtaaatatttgttgttgtcccccatcttgtagaatttatgccacacaatttaacga |
40210620 |
T |
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| Q |
310 |
gactatatgttgaacatgagctctttc |
336 |
Q |
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| T |
40210619 |
gactatatgttgaacatgagctctttc |
40210593 |
T |
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