View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6017_low_2 (Length: 527)
Name: NF6017_low_2
Description: NF6017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6017_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 28 - 508
Target Start/End: Complemental strand, 1242143 - 1241669
Alignment:
| Q |
28 |
atttatgtttcatgtctttttacatttttccttggccattggtttcatctgaaacttcaacttcaagaaatcacatattttaaaccttttgtggacacac |
127 |
Q |
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| T |
1242143 |
atttatgtttcatgtctttttacatttttccttggccattggtttcatctgaaacttcaacttcaagaaatcacatattttaaaccttttgtggacac-- |
1242046 |
T |
|
| Q |
128 |
tagacacaacaaaatcctttccaacgcacatgatctggtatctaatagaaaaaggaattgttggtaatgattggaaggcaatgattggaatgttcctaat |
227 |
Q |
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| T |
1242045 |
tagacacaacaaaatcctctccaacgcacatgatctggtatctaatagaaaaaggaattgttggtaatgattggaaggcaatgattggaatgttcctaat |
1241946 |
T |
|
| Q |
228 |
ttttctaattactgagcagaagacgaagttgcttgcagctgaataagatatatatcttgtgatgagagaatatgcagatccggtggtttttgaagcgggg |
327 |
Q |
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| T |
1241945 |
ttttctaattactgagcagaatacgaagttgcttgcagctgaataag----atatcttgtgatgagagaatatgcagatccggtggtttttgaagcgggg |
1241850 |
T |
|
| Q |
328 |
agaggctacagtaaagtcttgcaatgtagcaaactgagtaaattgcagtggtttttacaacaactgctccatagatataataggnnnnnnnnatgtgaag |
427 |
Q |
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| T |
1241849 |
agaggctacagtaaagtcttgcaatgtagcaaactgagtaaattgcagtggtttttacaacaactgctccatagataaaataggttttttttatgtgaag |
1241750 |
T |
|
| Q |
428 |
tgggccacaatatgggttggagttatgtgaaattagtgctagagtttggaattatatgcttaattggatcctttgttggtg |
508 |
Q |
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| T |
1241749 |
tgggccacaatatgggttggagttatgtgaaattagtgctagagtttggaattatatgcttaatcggatcctttgttggtg |
1241669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 472713 - 472331
Alignment:
| Q |
18 |
ctatacagttatttatgtttcatgtctttttacatttttccttggccattggtttcatctgaaacttcaacttcaagaaatcacatattttaaacctttt |
117 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
472713 |
ctatacggttatttatttttcatgtctttttacatttttccttagccatgggtttcatgtgaaacttcaacttcaagaaatcatagattttaaacctttt |
472614 |
T |
|
| Q |
118 |
gtggacacactagacacaacaaaatcctttccaacgcacatgatctggtatctaata--gaaaaaggaattgttggta---------atgattgga---- |
202 |
Q |
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|||||||| |||||||||||||||||| |||||| |||| |||| ||||||||| ||||||||||||||||||| | ||| | |
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| T |
472613 |
gtggacac--tagacacaacaaaatcctctccaactaacatt-tctgatatctaatatagaaaaaggaattgttggtatgtagtaatactattcaacaaa |
472517 |
T |
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| Q |
203 |
aggcaatgattggaatgttcctaatttttctaattactgagcagaagacgaagttgcttgcagctgaataagatatatatcttgtgatgagagaatatgc |
302 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
472516 |
atgcaatgattggaatgttcctaatttttctaattactgagcagaaggagaagttgcttgcagctgaataagatat----cttgtgatgagagaatatgc |
472421 |
T |
|
| Q |
303 |
agatccggtggtttttgaagcggggagaggctacagtaaagtcttgcaatgtagcaaactgagtaaattgcagtggtttttacaacaact |
392 |
Q |
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| T |
472420 |
agatccggtggtttttgaagcggggagaggctactgtaaagtattgcaatgtagcaaactgagtaaattgcggtggtttttacaacaact |
472331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 205 - 511
Target Start/End: Original strand, 41526736 - 41527055
Alignment:
| Q |
205 |
gcaatgattggaatgttcctaatttttctaattactgagcagaagacgaagttgcttgca----gctgaataagatatatatcttgtgatgagagaatat |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||| |||||||||||||| |
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| T |
41526736 |
gcaatgattggaatgttcctaatttttctaattactgagcagaaggagaagttgcttgcatgcagctgaataagatat----cttatgatgagagaatat |
41526831 |
T |
|
| Q |
301 |
gcagatccggtggtttttgaagcggggagaggctacagtaaagtcttgcaat---gtagcaaactgagtaaattgcagtggtttttacaa--------ca |
389 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
41526832 |
gcagatcaggtggtttttgaagcggggagaggctacagtaaagtattgcaatgtagtagcaaactgagtaaattgcagtggtttttacaacaactatgca |
41526931 |
T |
|
| Q |
390 |
actgctccatagatataat-aggnnnnnnnnatgtgaagtgggcc-acaatatgggttggagttatgtgaaattagtgctagagtttggaattatatgct |
487 |
Q |
| |
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||||||||||||||||| | || |||||||||||||| | ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41526932 |
actgctccatagatatattaagttgttttttatgtgaagtgggccaataatataggttggatttatgtgaaattagtgctagagtttggaattatatgct |
41527031 |
T |
|
| Q |
488 |
taattggatcctttgttggtgctg |
511 |
Q |
| |
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|||| ||||||||||| |||||| |
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| T |
41527032 |
taatcagatcctttgttagtgctg |
41527055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 41521902 - 41522034
Alignment:
| Q |
18 |
ctatacagttatttatgtttcatgtctttttacatttttccttggccattggtttcatctgaaacttcaacttcaagaaatcacatattttaaacctttt |
117 |
Q |
| |
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|||||| ||||||||| ||||||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
41521902 |
ctatacggttatttatttttcatgtcttttgacatttttccttagccatgggtttcatgtgaaacttcaacttcaagaaatcatagattttaaacctttt |
41522001 |
T |
|
| Q |
118 |
gtggacacactagacacaacaaaatcctttccaac |
152 |
Q |
| |
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|||| |||||||||||||||||||||| |||||| |
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| T |
41522002 |
gtgg--acactagacacaacaaaatcctctccaac |
41522034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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